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BaseInfo

ncRNA ID	novel_gar_miR1073
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:109733863-109734025 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	24
Mature sequence(if miRNA)	1 - GAGGAGGCAAAAUGCAAUUCGACU - 24
Stem-loop(if miRNA)	----    A  C          UC        G      AG    C              CAUAUAC       -     A    GA     GAGG GG AAAAUGCAAU  GACUUCUA UAUAAG  CCUC AUGGUACUUUUACC       AUUUGAA UAUUA AUUU  G     |||| || ||||||||||  |||||||| ||||||  |||| ||||||||||||||       ||||||| ||||| ||||  A     UUCC CC UUUUACGUUA  CUGAGGAU AUGUUC  GGAG UACCAUGAAAAUGG       UAAAUUU AUAGU UAAG  U AUCU    -  -          UA        G      CU    A              -------       U     A    GU
Stem-loop sequence	GAGGAGGCAAAAUGCAAUUCGACUUCUAGUAUAAGAGCCUCCAUGGUACUUUUACCCAUAUACAUUUGAAUAUUAAAUUUGAGAUUGGAAUAUGAUAUUUUAAAUGGUAAAAGUACCAUAGAGGUCCUUGUAGUAGGAGUCAUAUUGCAUUUUCCCCUUUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017768432.1	ncRNA:24   UCAGCUUAACGUAAAACGGAGGAG   1   |||||||||||||||||||*|||| targets:2449   AGUCGAAUUGCAUUUUGCCCCCUC   2472 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum tetratricopeptide repeat protein 7A-like (LOC108467698), transcript variant X2, mRNA	tetratricopeptide repeat protein 7A-like(LOC108467698)	coding protein	psRNATarget
XM_017768430.1	ncRNA:24   UCAGCUUAACGUAAAACGGAGGAG   1   |||||||||||||||||||*|||| targets:2704   AGUCGAAUUGCAUUUUGCCCCCUC   2727 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum tetratricopeptide repeat protein 7A-like (LOC108467698), transcript variant X1, mRNA	tetratricopeptide repeat protein 7A-like(LOC108467698)	coding protein	psRNATarget
XM_017752799.1	ncRNA:24   UC--AGCUUAACGUAAAACGGAGGAG   1   ||--|=*=|||||||||||||*|||| targets:1941   AGAUUUAGAUUGCAUUUUGCCCCCUC   1966 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108454360 (LOC108454360), transcript variant X2, mRNA	uncharacterized LOC108454360(LOC108454360)	coding protein	psRNATarget
XM_017752798.1	ncRNA:24   UC--AGCUUAACGUAAAACGGAGGAG   1   ||--|=*=|||||||||||||*|||| targets:1950   AGAUUUAGAUUGCAUUUUGCCCCCUC   1975 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108454360 (LOC108454360), transcript variant X1, mRNA	uncharacterized LOC108454360(LOC108454360)	coding protein	psRNATarget