Search result

BaseInfo

ncRNA ID	novel_gar_miR1052
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr9:67389075-67389132 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	24
Mature sequence(if miRNA)	35 - AAUUUGGCACUUAUGGCAUCUCUU - 58
Stem-loop(if miRNA)	--      -A     -  A  UAAAU     C   GAGGUG  AUGAG GC CA     UUUGU U   ||||||  ||||| || ||     |||||   CUCUAC  UAUUC CG GU     AAAUA C UU      GG     A  -  ---UU     C
Stem-loop sequence	GAGGUGAAUGAGGCACAUAAAUUUUGUCUCCAUAAAUUUGGCACUUAUGGCAUCUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017792419.1	ncRNA:24   UUCUCUACGGUAUUCACGGUUUAA   1   ||||*=|||||||||||||||||| targets:4366   AAGAAGUGCCAUAAGUGCCAAAUU   4389 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized LOC108488112 (LOC108488112), mRNA	uncharacterized LOC108488112(LOC108488112)	coding protein	psRNATarget
XM_017769123.1	ncRNA:24   UUCUCUACGGUAUUCACGGUUUAA   1   ||||||||=||||||||||||||* targets:5062   AAGAGAUGUCAUAAGUGCCAAAUC   5085 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum uncharacterized LOC108468231 (LOC108468231), mRNA	uncharacterized LOC108468231(LOC108468231)	coding protein	psRNATarget
XM_017773104.1	ncRNA:24   UUCUCUACGGUAUUCACGGUUUAA   1   ||||*=|||||||||||=|||||| targets:643   AAGAAGUGCCAUAAGUGUCAAAUU   666 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108471493 (LOC108471493), mRNA	uncharacterized LOC108471493(LOC108471493)	coding protein	psRNATarget
XM_017762708.1	ncRNA:24   UUCUCUACGGUAUUCACGGUUUAA   1   ||||*=|||||||||||=|||||| targets:823   AAGAAGUGCCAUAAGUGUCAAAUU   846 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108462808 (LOC108462808), mRNA	uncharacterized LOC108462808(LOC108462808)	coding protein	psRNATarget
XM_017776998.1	ncRNA:24   UUCUCUACGGUAUUCACGGUUUAA   1   ||||*=|||||||||||=|||||| targets:1417   AAGAAGUGCCAUAAGUGUCAAAUU   1440 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108474973 (LOC108474973), mRNA	uncharacterized LOC108474973(LOC108474973)	coding protein	psRNATarget
XM_017780305.1	ncRNA:24   UUCUCUACGGUAUUCACGGUUUAA   1   ||||*=||||||||||*||||||| targets:667   AAGAAGUGCCAUAAGUACCAAAUU   690 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108477819 (LOC108477819), mRNA	uncharacterized LOC108477819(LOC108477819)	coding protein	psRNATarget
XM_017775330.1	ncRNA:24   UUCUCUACGGUAUUCACGGUUUAA   1   ||||*=||||||||*||||||||| targets:667   AAGAAGUGCCAUAAAUGCCAAAUU   690 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108473649 (LOC108473649), mRNA	uncharacterized LOC108473649(LOC108473649)	coding protein	psRNATarget
XM_017762725.1	ncRNA:24   UUCUCUACGGUAUUCACGGUUUAA   1   ||||*|||||||||*||||||||* targets:5533   AAGAAAUGCCAUAAAUGCCAAAUC   5556 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108462825 (LOC108462825), mRNA	uncharacterized LOC108462825(LOC108462825)	coding protein	psRNATarget
XM_017790375.1	ncRNA:24   UUCUCUACGGUAUUCACGGUUUAA   1   ||*|*|||||*||||||*|||||| targets:779   AAUAUAUGCCUUAAGUGACAAAUU   802 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uridine-cytidine kinase C-like (LOC108486351), transcript variant X2, mRNA	uridine-cytidine kinase C-like(LOC108486351)	coding protein	psRNATarget
XM_017790374.1	ncRNA:24   UUCUCUACGGUAUUCACGGUUUAA   1   ||*|*|||||*||||||*|||||| targets:772   AAUAUAUGCCUUAAGUGACAAAUU   795 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uridine-cytidine kinase C-like (LOC108486351), transcript variant X1, mRNA	uridine-cytidine kinase C-like(LOC108486351)	coding protein	psRNATarget
XM_017790377.1	ncRNA:24   UUCUCUACGGUAUUCACGGUUUAA   1   ||*|*|||||*||||||*|||||| targets:789   AAUAUAUGCCUUAAGUGACAAAUU   812 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uridine-cytidine kinase C-like (LOC108486351), transcript variant X3, mRNA	uridine-cytidine kinase C-like(LOC108486351)	coding protein	psRNATarget
XM_017773037.1	ncRNA:24   UUCUCUACGGUAUUCACGGUUUAA   1   ||||*=|*|||||||||||||||* targets:1312   AAGAAGUACCAUAAGUGCCAAAUC   1335 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum uncharacterized LOC108471417 (LOC108471417), mRNA	uncharacterized LOC108471417(LOC108471417)	coding protein	psRNATarget