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BaseInfo

ncRNA ID novel_gar_miR1051
Species Gossypium arboreum
Class miRNA
Genome position Chr9:66099367-66099466 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588
Length 24
Mature sequence(if miRNA) 77 - CAGAAUAAGAAUACUGAUGUGGCA - 100
Stem-loop(if miRNA) --     A  A         CU          G      A   -   UUU
  CCACA CA UAUUUUUAU  UGAAUUUUAA AUUUUA UUU AAA   A
  ||||| || |||||||||  |||||||||| |||||| ||| |||   A
  GGUGU GU AUAAGAAUA  ACUUAAAAUU UAAAAU AAA UUU   U
AC     A  C         AG          G      A   C   UUU
Stem-loop sequence CCACAACAAUAUUUUUAUCUUGAAUUUUAAGAUUUUAAUUUAAAUUUAAUUUUUUUCAAAAUAAAAUGUUAAAAUUCAGAAUAAGAAUACUGAUGUGGCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017758885.1
ncRNA:24   ACGGUGUAGUCAUAAGAAUAAGAC   1
  ||=||=||||||||||||||||||
targets:1668   UGUCAUAUCAGUAUUCUUAUUCUG   1691

1.0 PREDICTED: Gossypium arboreum enolase-like (LOC108459500), mRNA enolase-like(LOC108459500) coding protein psRNATarget
XM_017767146.1
ncRNA:24   ACGGUGUAGUCAUAAGAAUAAGAC   1
  ||*||||||*||||||||||*|||
targets:387   UGGCACAUCUGUAUUCUUAUCCUG   410

2.5 PREDICTED: Gossypium arboreum organic cation/carnitine transporter 7-like (LOC108466779), mRNA organic cation/carnitine transporter 7-like(LOC108466779) coding protein psRNATarget
XM_017764045.1
ncRNA:24   ACGGUGUAGUCAUAAGAAUAAGAC   1
  ||*|*||||*||||||||||*|||
targets:573   UGGCUCAUCUGUAUUCUUAUCCUG   596

2.5 PREDICTED: Gossypium arboreum organic cation/carnitine transporter 7-like (LOC108463999), mRNA organic cation/carnitine transporter 7-like(LOC108463999) coding protein psRNATarget