ncRNA ID | novel_gar_miR1046 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr9:48612675-48612901 [+] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR1029588 |
Length | 23 |
Mature sequence(if miRNA) | 205 - UGGAGGAGAGCAAAAUUCGGCGC - 227 |
Stem-loop(if miRNA) |
--                                                                C        A                          -----AUA     A   GCCGAAUUUUGCUCUCCUCCAUAGCUGGGGUUUCUUCAAUUUUCAAACUCCAUAGUAAGUGAUU CAAGCUCC UUUUUAAUGAUCUUUACAUUUUUGGA        AGCUU A   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||        |||||   CGGCUUAAAACGAGAGGAGGUAUCGACCCCAAAGAAGUUAAAAGUUUGAGGUAUCAUUCACUAA GUUCGGGG AAAAAUUACUAGAAAUGUAAAAACCU        UUGAA U CG                                                                A        C                          CAGGGCCA     C |
Stem-loop sequence | GCCGAAUUUUGCUCUCCUCCAUAGCUGGGGUUUCUUCAAUUUUCAAACUCCAUAGUAAGUGAUUCCAAGCUCCAUUUUUAAUGAUCUUUACAUUUUUGGAAUAAGCUUAAUCAAGUUACCGGGACUCCAAAAAUGUAAAGAUCAUUAAAAACGGGGCUUGAAAUCACUUACUAUGGAGUUUGAAAAUUGAAGAAACCCCAGCUAUGGAGGAGAGCAAAAUUCGGCGC |