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BaseInfo

ncRNA ID novel_gar_miR1043
Species Gossypium arboreum
Class miRNA
Genome position Chr9:4776858-4777018 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588
Length 24
Mature sequence(if miRNA) 138 - AAGGCCAUGACUUUUAGCGGCGUU - 161
Stem-loop(if miRNA) --            C   AA       G GU      AGAAA                   UA      G   UG    U
  CGCUGCUAAAGG CAU  UUUUUAG G  GUUUUU     AAGCGUCGCUAAAGGUUAU  UUUUUA UGG  UUUU A
  |||||||||||| |||  ||||||| |  ||||||     |||||||||||||||||||  |||||| |||  |||| G
  GCGGCGAUUUUC GUA  GGAAAUC C  CGAAAG     UUUGCGGCGAUUUUCAAUA  GGAAAU AUU  GAAA G
UU            A   CC       G UG      GGGUG                   CC      G   GU    A
Stem-loop sequence CGCUGCUAAAGGCCAUAAUUUUUAGGGGUGUUUUUAGAAAAAGCGUCGCUAAAGGUUAUUAUUUUUAGUGGUGUUUUUAGGAAAAGUGUUAGUAAAGGCCAUAACUUUUAGCGGCGUUUGUGGGGAAAGCGUCGCUAAAGGCCAUGACUUUUAGCGGCGUU