| ncRNA ID | ath-miR5642b |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr2:2805-3176 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 20 |
| Mature sequence(if miRNA) | 341 - UCUCGCGCUUGUACGGCUUU - 360 |
| Stem-loop(if miRNA) |
CAU -- U CC --- GA -- GCCCAUGGGCAUCGACACCUUGCGGCUAGGAACUGGAACGAGACGGGUAGCAAAGAUUUCGAGUAGCACUUCAUACUACCGUGGGUUUUUUAAACCUUCCGAGUUUUGUUGAUGUGUUUCCGAGAAUUAGCAAACCG GGAUCC GCC AGGCUGU CGAGUGUGA GCGAGGUGU G UGUC U |||||| ||| ||||||| ||||||||| ||||||||| | |||| CUUAGG CGG UUCGGCA GUUCGCGCU UGGAAGCCC U CGGA A --G UU U -U CUA -- GU UCCGCCUAGGUACGAAAGGUUGCUUCGUGCGGGUAGGUUGGAUCCGCUCUGUUCCCAAGUGUAAAGCAAGUAGUGGGAACCGGCCGAAAGCUUGUCGGCCUGAGGGUAGUUUUCUACCAACGGUUCUUGUAGAAGCA |
| Stem-loop sequence | CAUGGAUCCGCCUAGGCUGUCCCGAGUGUGAGCGAGGUGUGAGUGUCGCCCAUGGGCAUCGACACCUUGCGGCUAGGAACUGGAACGAGACGGGUAGCAAAGAUUUCGAGUAGCACUUCAUACUACCGUGGGUUUUUUAAACCUUCCGAGUUUUGUUGAUGUGUUUCCGAGAAUUAGCAAACCGUAACGAAGAUGUUCUUGGCAACCAUCUUUUGAUGGGAGUCCGGCUGUUCGAAAGCCGGCCAAGGGUGAUGAACGAAAUGUGAACCCUUGUCUCGCCUAGGUUGGAUGGGCGUGCUUCGUUGGAAAGCAUGGAUCCGCCUAGGCUGUCCCGAAGGUAUCUCGCGCUUGUACGGCUUUGGCUUGGAUUCG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EF183325.1 |
|
0.0 | Arabidopsis thaliana clone asmbl_5566 unknown mRNA sequence | NA | coding protein | psRNATarget |
| 1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |