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BaseInfo

ncRNA ID novel_gar_miR1042
Species Gossypium arboreum
Class miRNA
Genome position Chr10:112233324-112233386 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588
Length 21
Mature sequence(if miRNA) 1 - AGCCUGUAUGGCUCACACGGC - 21
Stem-loop(if miRNA) --    U      CUC       CACACUCCA
  AGCC GUAUGG   ACACGGC         G
  |||| ||||||   |||||||
  UCGG CAUGUC   UGUGCCG         C
UA    -      UUC       AUACACCAC
Stem-loop sequence AGCCUGUAUGGCUCACACGGCCACACUCCAGCCACCACAUAGCCGUGUCUUCUGUACGGCUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017762252.1
ncRNA:21   CGGCACACUCGGUAUGUCCGA   1
  |||||||||||||*|||||||
targets:4757   GCCGUGUGAGCCACACAGGCU   4777

1.5 PREDICTED: Gossypium arboreum G-type lectin S-receptor-like serine/threonine-protein kinase SD1-13 (LOC108462280), mRNA G-type lectin S-receptor-like serine/threonine-protein kinase SD1-13(LOC108462280) coding protein psRNATarget