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BaseInfo

ncRNA ID novel_gar_miR1037
Species Gossypium arboreum
Class miRNA
Genome position Chr9:6654766-6654853 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588
Length 22
Mature sequence(if miRNA) 67 - UUGGGGGAAGGAACAGACAGCU - 88
Stem-loop(if miRNA) --UU          A      GCUUUUU    -A  CUAUACGC
    GGGGGAAGGA CAGACA       GACU  GU        A
    |||||||||| ||||||       ||||  ||        U
    CCUUCUUCCU GUUUGU       UUGG  AU        A
UCUU          G      ACUUUAU    CA  UUUCUUUA
Stem-loop sequence UUGGGGGAAGGAACAGACAGCUUUUUGACUAGUCUAUACGCAUAAUUUCUUUUAACGGUUUAUUUCAUGUUUGGUCCUUCUUCCUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017760465.1
ncRNA:22   UCGACAGACAAGGAAGGGGGUU   1
  *|*|*|||||||=|||||||||
targets:110   CGAUCUCUGUUCUUUCCCCCAA   131

2.5 PREDICTED: Gossypium arboreum serine/arginine-rich splicing factor SC35 (LOC108460805), transcript variant X7, mRNA serine/arginine-rich splicing factor SC35(LOC108460805) coding protein psRNATarget
XM_017760464.1
ncRNA:22   UCGACAGACAAGGAAGGGGGUU   1
  *|*|*|||||||=|||||||||
targets:110   CGAUCUCUGUUCUUUCCCCCAA   131

2.5 PREDICTED: Gossypium arboreum serine/arginine-rich splicing factor SC35 (LOC108460805), transcript variant X1, mRNA serine/arginine-rich splicing factor SC35(LOC108460805) coding protein psRNATarget