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BaseInfo

ncRNA ID	novel_gar_miR1030
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr9:41449874-41449971 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	24
Mature sequence(if miRNA)	1 - UCAUGGAAAAUGAGCUUUGAUGGC - 24
Stem-loop(if miRNA)	--       A -  G  UUCCCGGAUGAAGACUUAAUGUGCAUUACAGAA   CAUUAAG U UU AU                                 A   ||||||| | || ||                                 A   GUAGUUU C AG UA                                 A CG       - G  -  AAAGGUACUAAAAAGAAAACUACAGAGCGUGAG
Stem-loop sequence	CAUUAAGAUUUGAUUUCCCGGAUGAAGACUUAAUGUGCAUUACAGAAAAAGAGUGCGAGACAUCAAAAGAAAAAUCAUGGAAAAUGAGCUUUGAUGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017794497.1	ncRNA:24   CGGUAGUUUCGAGUAAAAGGUACU   1   *===||||||||||||*||||||* targets:1523   UUUGUCAAAGCUCAUUCUCCAUGC   1546 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108489761 (LOC108489761), transcript variant X5, mRNA	uncharacterized LOC108489761(LOC108489761)	coding protein	psRNATarget
XM_017794494.1	ncRNA:24   CGGUAGUUUCGAGUAAAAGGUACU   1   *===||||||||||||*||||||* targets:1968   UUUGUCAAAGCUCAUUCUCCAUGC   1991 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108489761 (LOC108489761), transcript variant X2, mRNA	uncharacterized LOC108489761(LOC108489761)	coding protein	psRNATarget
XM_017794493.1	ncRNA:24   CGGUAGUUUCGAGUAAAAGGUACU   1   *===||||||||||||*||||||* targets:1986   UUUGUCAAAGCUCAUUCUCCAUGC   2009 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108489761 (LOC108489761), transcript variant X1, mRNA	uncharacterized LOC108489761(LOC108489761)	coding protein	psRNATarget
XM_017794495.1	ncRNA:24   CGGUAGUUUCGAGUAAAAGGUACU   1   *===||||||||||||*||||||* targets:2243   UUUGUCAAAGCUCAUUCUCCAUGC   2266 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108489761 (LOC108489761), transcript variant X3, mRNA	uncharacterized LOC108489761(LOC108489761)	coding protein	psRNATarget
XM_017794498.1	ncRNA:24   CGGUAGUUUCGAGUAAAAGGUACU   1   *===||||||||||||*||||||* targets:2247   UUUGUCAAAGCUCAUUCUCCAUGC   2270 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108489761 (LOC108489761), transcript variant X6, mRNA	uncharacterized LOC108489761(LOC108489761)	coding protein	psRNATarget
XM_017794496.1	ncRNA:24   CGGUAGUUUCGAGUAAAAGGUACU   1   *===||||||||||||*||||||* targets:2281   UUUGUCAAAGCUCAUUCUCCAUGC   2304 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108489761 (LOC108489761), transcript variant X4, mRNA	uncharacterized LOC108489761(LOC108489761)	coding protein	psRNATarget
XM_017794502.1	ncRNA:24   CGGUAGUUUCGAGUAAAAGGUACU   1   *===||||||||||||*||||||* targets:2337   UUUGUCAAAGCUCAUUCUCCAUGC   2360 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108489761 (LOC108489761), transcript variant X9, mRNA	uncharacterized LOC108489761(LOC108489761)	coding protein	psRNATarget
XM_017794500.1	ncRNA:24   CGGUAGUUUCGAGUAAAAGGUACU   1   *===||||||||||||*||||||* targets:2339   UUUGUCAAAGCUCAUUCUCCAUGC   2362 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108489761 (LOC108489761), transcript variant X8, mRNA	uncharacterized LOC108489761(LOC108489761)	coding protein	psRNATarget
XM_017794499.1	ncRNA:24   CGGUAGUUUCGAGUAAAAGGUACU   1   *===||||||||||||*||||||* targets:2373   UUUGUCAAAGCUCAUUCUCCAUGC   2396 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108489761 (LOC108489761), transcript variant X7, mRNA	uncharacterized LOC108489761(LOC108489761)	coding protein	psRNATarget