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BaseInfo

ncRNA ID novel_gar_miR1015
Species Gossypium arboreum
Class miRNA
Genome position Chr9:91264245-91264425 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588
Length 21
Mature sequence(if miRNA) 1 - AAGGAUCAAUUUGCUCUUUGA - 21
Stem-loop(if miRNA) --   A        A   A   C         A       A   GUA    --        -GG   ----G   GA  ---AA    -   A   A
  AAA AGCAAAUU AUU UUU UAUUAAAAA UUUAUCC UUU   UUCU  UAAAAAUU   CUU     GUU  CA     UACA GUG CAU U
  ||| |||||||| ||| ||| ||||||||| ||||||| |||   ||||  ||||||||   |||     |||  ||     |||| ||| ||| G
  UUU UCGUUUAA UAG AAA AUAAUUUUU AGGUAGG AAA   GAGA  AUUUUUAA   GAG     CAG  GU     AUGU CAC GUG A
AG   C        C   G   -         A       A   --A    CA        ACA   AUAUA   UC  AUUCA    A   C   U
Stem-loop sequence AAAAAGCAAAUUAAUUAUUUCUAUUAAAAAAUUUAUCCAUUUGUAUUCUUAAAAAUUGGCUUGGUUGACAAAUACAGUGACAUAUGAUGUGCCACAUGUAACUUAUGCUGACAUAUAGAGACAAAUUUUUAACAGAGAAAAAGGAUGGAAUUUUUAAUAAAAGGAUCAAUUUGCUCUUUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017754697.1
ncRNA:21   AGUUUCUCGUUUAACUAGGAA   1
  ||||||||||||||||||=||
targets:1377   UCAAAGAGCAAAUUGAUCUUU   1397

1.5 PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X2, mRNA uncharacterized protein DDB_G0271670(LOC108456101) coding protein psRNATarget
XM_017754696.1
ncRNA:21   AGUUUCUCGUUUAACUAGGAA   1
  ||||||||||||||||||=||
targets:1377   UCAAAGAGCAAAUUGAUCUUU   1397

1.5 PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X1, mRNA uncharacterized protein DDB_G0271670(LOC108456101) coding protein psRNATarget
XM_017789991.1
ncRNA:21   AGUUUCUCGUUUAACUAGGAA   1
  *||||||*||||*||||||||
targets:1408   CCAAAGACCAAACUGAUCCUU   1428

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X6, mRNA uncharacterized LOC108486142(LOC108486142) coding protein psRNATarget
XM_017789990.1
ncRNA:21   AGUUUCUCGUUUAACUAGGAA   1
  *||||||*||||*||||||||
targets:1411   CCAAAGACCAAACUGAUCCUU   1431

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X5, mRNA uncharacterized LOC108486142(LOC108486142) coding protein psRNATarget
XM_017789989.1
ncRNA:21   AGUUUCUCGUUUAACUAGGAA   1
  *||||||*||||*||||||||
targets:1500   CCAAAGACCAAACUGAUCCUU   1520

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X3, mRNA uncharacterized LOC108486142(LOC108486142) coding protein psRNATarget
XM_017789988.1
ncRNA:21   AGUUUCUCGUUUAACUAGGAA   1
  *||||||*||||*||||||||
targets:1596   CCAAAGACCAAACUGAUCCUU   1616

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X2, mRNA uncharacterized LOC108486142(LOC108486142) coding protein psRNATarget
XM_017789992.1
ncRNA:21   AGUUUCUCGUUUAACUAGGAA   1
  *||||||*||||*||||||||
targets:1889   CCAAAGACCAAACUGAUCCUU   1909

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X7, mRNA uncharacterized LOC108486142(LOC108486142) coding protein psRNATarget
XM_017789987.1
ncRNA:21   AGUUUCUCGUUUAACUAGGAA   1
  *||||||*||||*||||||||
targets:1888   CCAAAGACCAAACUGAUCCUU   1908

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X1, mRNA uncharacterized LOC108486142(LOC108486142) coding protein psRNATarget
XM_017779595.1
ncRNA:21   AGUUUCUCGUUUAACUAGGAA   1
  **|||||||||*||||||||*
targets:515   GGAAAGAGCAACUUGAUCCUA   535

2.5 PREDICTED: Gossypium arboreum U1 small nuclear ribonucleoprotein A-like (LOC108477138), mRNA U1 small nuclear ribonucleoprotein A-like(LOC108477138) coding protein psRNATarget
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