ncRNA ID | novel_gar_miR1009 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr8:84786274-84786350 [+] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR1029588;SRR1029586 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AUACUGUAUUCCUUUGAAACAAGC - 24 |
Stem-loop(if miRNA) |
--    U  A   C         AGC   UCU    G  CA   AUAC GU UUC UUUGAAACA   GAA   UGAC UC  A   |||| || ||| |||||||||   |||   |||| ||   UAUG UA AAG AAAUUUUGU   CUU   ACUG AG  U UU    C  -   A         GAA   ---    -  UU |
Stem-loop sequence | AUACUGUAUUCCUUUGAAACAAGCGAAUCUUGACGUCCAAUUUGAGUCAUUCAAGUGUUUUAAAAGAAAUCGUAUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_017767062.1 |
|
2.5 | PREDICTED: Gossypium arboreum potassium transporter 5 (LOC108466688), mRNA | potassium transporter 5(LOC108466688) | coding protein | psRNATarget |