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BaseInfo

ncRNA ID novel_gar_miR1009
Species Gossypium arboreum
Class miRNA
Genome position Chr8:84786274-84786350 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588;SRR1029586
Length 24
Mature sequence(if miRNA) 1 - AUACUGUAUUCCUUUGAAACAAGC - 24
Stem-loop(if miRNA) --    U  A   C         AGC   UCU    G  CA
  AUAC GU UUC UUUGAAACA   GAA   UGAC UC  A
  |||| || ||| |||||||||   |||   |||| ||
  UAUG UA AAG AAAUUUUGU   CUU   ACUG AG  U
UU    C  -   A         GAA   ---    -  UU
Stem-loop sequence AUACUGUAUUCCUUUGAAACAAGCGAAUCUUGACGUCCAAUUUGAGUCAUUCAAGUGUUUUAAAAGAAAUCGUAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017767062.1
ncRNA:24   CGAACAAAGUUUCCUUAUGUCAUA   1
  ****||||||||||||||||*||*
targets:1608   UAAGGUUUCAAAGGAAUACAUUAA   1631

2.5 PREDICTED: Gossypium arboreum potassium transporter 5 (LOC108466688), mRNA potassium transporter 5(LOC108466688) coding protein psRNATarget