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BaseInfo

ncRNA ID	novel_gar_miR1000
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr8:28368268-28368378 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	24
Mature sequence(if miRNA)	1 - UGGAAAAGAGAUAGAGAUGAUGUG - 24
Stem-loop(if miRNA)	--      A A    G -          C ACA       A            C A   UGGAAA G GAUA A GAUGAUGUGG G   CUAUUUC UACAAUCCUUUC C G   |||||| | |||| | |||||||||| |   ||||||| |||||||||||| | A   ACCUUU C CUAU U CUACUACACC C   GAUGAAG AUGUUAGGAAAG G U UA      C -    G A          A AGG       C            A A
Stem-loop sequence	UGGAAAAGAGAUAGAGAUGAUGUGGCGACACUAUUUCAUACAAUCCUUUCCCAGAUAGAGAAAGGAUUGUACGAAGUAGGGACACCACAUCAUCAUGUAUCCCUUUCCAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017751331.1	ncRNA:24   GUGUAGUAGAGAUAGAGAAAAGGU   1   **|*|=|||||||||||||||||| targets:343   AUCUUUAUCUCUAUCUCUUUUCCA   366 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum serine/threonine-protein kinase HT1-like (LOC108453304), transcript variant X2, mRNA	serine/threonine-protein kinase HT1-like(LOC108453304)	coding protein	psRNATarget
XM_017751330.1	ncRNA:24   GUGUAGUAGAGAUAGAGAAAAGGU   1   **|*|=|||||||||||||||||| targets:372   AUCUUUAUCUCUAUCUCUUUUCCA   395 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum serine/threonine-protein kinase HT1-like (LOC108453304), transcript variant X1, mRNA	serine/threonine-protein kinase HT1-like(LOC108453304)	coding protein	psRNATarget
XM_017794025.1	ncRNA:24   GUGUAGUAGAGAUAGAGAAAAGGU   1   *|=*|=|||||||||||||||=|| targets:58   GAUUUUAUCUCUAUCUCUUUUUCA   81 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108489465 (LOC108489465), transcript variant X1, mRNA	uncharacterized LOC108489465(LOC108489465)	coding protein	psRNATarget
XM_017759185.1	ncRNA:24   GU--GUAGUAGAGAUAGAGAAAAGGU   1   ||--||*|||||||*||||||||||* targets:38   CAUUCAACAUCUCUUUCUCUUUUCCU   63 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum dof zinc finger protein DOF5.1-like (LOC108459782), mRNA	dof zinc finger protein DOF5.1-like(LOC108459782)	coding protein	psRNATarget