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BaseInfo

ncRNA ID novel_gar_miR994
Species Gossypium arboreum
Class miRNA
Genome position Chr3:94004016-94004168 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586
Length 24
Mature sequence(if miRNA) 130 - ACUAUAGAACAUGAUCUUUAGCGG - 153
Stem-loop(if miRNA) --    U                        C  G  --AAA      CUAAAUAACAUGAUCUUUAACAAUGCUUC
  ACUA AGAACAUGAUCUUUAGCGGCGCUU UC UA     AUGUUG                             U
  |||| |||||||||||||||||||||||| || ||     ||||||                             C
  UGAU UCUUGUACUAGAAAUCGCCGCGAA AG AU     GGCGAU                             A
GG    U                        A  G  GUUUG      UUCUUAUGCUAGAAAUCGCCACACAAAAU
Stem-loop sequence ACUAUAGAACAUGAUCUUUAGCGGCGCUUCUCGUAAAAAUGUUGCUAAAUAACAUGAUCUUUAACAAUGCUUCUCAUAAAACACACCGCUAAAGAUCGUAUUCUUUAGCGGGUUUGUAGGAAAAGCGCCGCUAAAGAUCAUGUUCUUUAGUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017768165.1
ncRNA:24   GGCGAUUUCUAGUACAAGAUAUCA   1
  |||||||||||||||||||*||||
targets:1505   CCGCUAAAGAUCAUGUUCUUUAGU   1528

1.5 PREDICTED: Gossypium arboreum diphthamide biosynthesis protein 2-like (LOC108467522), mRNA diphthamide biosynthesis protein 2-like(LOC108467522) coding protein psRNATarget