ncRNA ID | novel_gar_miR994 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr3:94004016-94004168 [-] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR1029586 |
Length | 24 |
Mature sequence(if miRNA) | 130 - ACUAUAGAACAUGAUCUUUAGCGG - 153 |
Stem-loop(if miRNA) |
--    U                        C  G  --AAA      CUAAAUAACAUGAUCUUUAACAAUGCUUC   ACUA AGAACAUGAUCUUUAGCGGCGCUU UC UA     AUGUUG                             U   |||| |||||||||||||||||||||||| || ||     ||||||                             C   UGAU UCUUGUACUAGAAAUCGCCGCGAA AG AU     GGCGAU                             A GG    U                        A  G  GUUUG      UUCUUAUGCUAGAAAUCGCCACACAAAAU |
Stem-loop sequence | ACUAUAGAACAUGAUCUUUAGCGGCGCUUCUCGUAAAAAUGUUGCUAAAUAACAUGAUCUUUAACAAUGCUUCUCAUAAAACACACCGCUAAAGAUCGUAUUCUUUAGCGGGUUUGUAGGAAAAGCGCCGCUAAAGAUCAUGUUCUUUAGUGG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_017768165.1 |
|
1.5 | PREDICTED: Gossypium arboreum diphthamide biosynthesis protein 2-like (LOC108467522), mRNA | diphthamide biosynthesis protein 2-like(LOC108467522) | coding protein | psRNATarget |