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BaseInfo

ncRNA ID	novel_gar_miR987
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr8:74914856-74915046 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	24
Mature sequence(if miRNA)	1 - AAGGACCAGUUUGCUCUUUGAUCU - 24
Stem-loop(if miRNA)	--                    C            A  C    CU    -AC           ------A  ---  -   UGA  GAAUGAUCUGAUGCCAU   AUUAAAGAGCAAAUUGGUCC UUCUGUUAAAAA UU AUCC  UUGU   UGUUAAAAACU       GU   GU GGC   CA                 A   |||||||||||||||||||| |||||||||||| || ||||  ||||   |||||||||||       ||   || |||   ||                 U   UAGUUUCUCGUUUGACCAGG AAGACAAUUUUU AA UAGG  AACA   ACAAUUUUUGA       CA   AG UAU   AU                 G UC                    -            A  U    -U    AUA           CUAGAGA  UGU  U   ---  UCGAUGUAUACCUUGUG
Stem-loop sequence	AUUAAAGAGCAAAUUGGUCCCUUCUGUUAAAAAAUUCAUCCCUUUGUACUGUUAAAAACUAGUGUGGCUGACAGAAUGAUCUGAUGCCAUAUGGUGUUCCAUAUGUAGCUUAUAUUGAUGUACAGAGAUCAGUUUUUAACAAUAACAAUGGAUUAAAUUUUUAACAGAAGGACCAGUUUGCUCUUUGAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017754589.1	ncRNA:24   UCUAGUUUCUCGUUUGACCAGGAA   1   |*||||||*|*||||||||||||| targets:1484   AAAUCAAAAAACAAACUGGUCCUU   1507 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum transcription factor PIF4-like (LOC108455997), mRNA	transcription factor PIF4-like(LOC108455997)	coding protein	psRNATarget
XM_017784090.1	ncRNA:24   UCUAGUUUCUCGUUUGACCAGGAA   1   ||||||||*||||||||||||*|| targets:1330   AGAUCAAAAAGCAAACUGGUCAUU   1353 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108480941 (LOC108480941), transcript variant X1, mRNA	uncharacterized LOC108480941(LOC108480941)	coding protein	psRNATarget
XM_017789991.1	ncRNA:24   UCUA-------GUUUCUCGUUUGACCAGGAA   1   =|||-------||||||*|||||||*||||| targets:1398   GGAUUUUAUUCCAAAGACCAAACUGAUCCUU   1428 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X6, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789990.1	ncRNA:24   UCUA-------GUUUCUCGUUUGACCAGGAA   1   =|||-------||||||*|||||||*||||| targets:1401   GGAUUUUAUUCCAAAGACCAAACUGAUCCUU   1431 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X5, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789989.1	ncRNA:24   UCUA-------GUUUCUCGUUUGACCAGGAA   1   =|||-------||||||*|||||||*||||| targets:1490   GGAUUUUAUUCCAAAGACCAAACUGAUCCUU   1520 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X3, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789988.1	ncRNA:24   UCUA-------GUUUCUCGUUUGACCAGGAA   1   =|||-------||||||*|||||||*||||| targets:1586   GGAUUUUAUUCCAAAGACCAAACUGAUCCUU   1616 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X2, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789992.1	ncRNA:24   UCUA-------GUUUCUCGUUUGACCAGGAA   1   =|||-------||||||*|||||||*||||| targets:1879   GGAUUUUAUUCCAAAGACCAAACUGAUCCUU   1909 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X7, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789987.1	ncRNA:24   UCUA-------GUUUCUCGUUUGACCAGGAA   1   =|||-------||||||*|||||||*||||| targets:1878   GGAUUUUAUUCCAAAGACCAAACUGAUCCUU   1908 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X1, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget