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BaseInfo

ncRNA ID novel_gar_miR986
Species Gossypium arboreum
Class miRNA
Genome position Chr8:19029741-19029799 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588
Length 24
Mature sequence(if miRNA) 36 - UCGGACACGAGGGGUUGACAGACU - 59
Stem-loop(if miRNA) --     -   A   -   AC    GA   U
  UUUGU AAC CCC CGU  CCGA  CCG U
  ||||| ||| ||| |||  ||||  |||
  AGACA UUG GGG GCA  GGCU  GGC G
UC     G   -   A   CA    GA   C
Stem-loop sequence UUUGUAACACCCCGUACCCGAGACCGUUGCCGGAGUCGGACACGAGGGGUUGACAGACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017754443.1
ncRNA:24   UCAGACAGUUGGGGAGCACAGGCU   1
  =|*=|||=||||||||||||||||
targets:16   GGCUUGUUAACCCCUCGUGUCCGA   39

1.0 PREDICTED: Gossypium arboreum uncharacterized protein At4g17910-like (LOC108455875), transcript variant X1, mRNA uncharacterized protein At4g17910-like(LOC108455875) coding protein psRNATarget
XM_017754444.1
ncRNA:24   UCAGACAGUUGGGGAGCACAGGCU   1
  =|*=|||=||||||||||||||||
targets:16   GGCUUGUUAACCCCUCGUGUCCGA   39

1.0 PREDICTED: Gossypium arboreum uncharacterized protein At4g17910-like (LOC108455875), transcript variant X2, mRNA uncharacterized protein At4g17910-like(LOC108455875) coding protein psRNATarget