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BaseInfo

ncRNA ID	ath-miRf11039-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - ACUGAGCUAUAGGCUCUUCU - NA
Stem-loop(if miRNA)	U                           C                   A  A   GAAAU   A   UUGC   AUAGAA  UU     ACU  UGCUCUACCACUGAGCUAUAGGCUCUU UUGACUUUAGUGUAUGCUA CU AUA     ACU AAC    AUG      CA  AUUUU   U  ||||||||||||||||||||||||||| ||||||||||||||||||| || |||     ||| |||    |||      ||  |||||   A  ACGAGAUGGUGACUCGAUAUCCGAGAA AACUGAAAUCACAUAUGAU GA UAU     UGA UUG    UAC      GU  UAAGA   A A                           U                   -  A   -AUAU   A   UUAA   AAAGAG  UU     CAA
Stem-loop sequence	UUGCUCUACCACUGAGCUAUAGGCUCUUCUUGACUUUAGUGUAUGCUAACUAAUAGAAAUACUAAACUUGCAUGAUAGAACAUUAUUUUACUUAAAACAGAAUUUUGGAGAAACAUAAUUGUUAAGUUAUAUAUAAGUAGUAUACACUAAAGUCAAUAAGAGCCUAUAGCUCAGUGGUAGAGCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT025175.1	ncRNA:20   UCUUCUCGGAUAUCGAGUCA   1   *||||||||||||*|||||| targets:24   UGAAGAGCCUAUAUCUCAGU   43 Target Full Sequence	1.5	Arabidopsis thaliana At2g41070 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001336890.1	ncRNA:20   UCUUCUCGGAUAUCGAGUCA   1   *||||||||||||*|||||| targets:56   UGAAGAGCCUAUAUCUCAGU   75 Target Full Sequence	1.5	Arabidopsis thaliana Basic-leucine zipper (bZIP) transcription factor family protein (EEL), mRNA	Basic-leucine zipper (bZIP) transcription factor family protein(EEL)	coding protein	psRNATarget
BX842052.1	ncRNA:20   UCUUCUCGGAUAUCGAGUCA   1   *||||||||||||*|||||| targets:182   UGAAGAGCCUAUAUCUCAGU   201 Target Full Sequence	1.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL12ZG04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_001336891.1	ncRNA:20   UCUUCUCGGAUAUCGAGUCA   1   *||||||||||||*|||||| targets:417   UGAAGAGCCUAUAUCUCAGU   436 Target Full Sequence	1.5	Arabidopsis thaliana Basic-leucine zipper (bZIP) transcription factor family protein (EEL), mRNA	Basic-leucine zipper (bZIP) transcription factor family protein(EEL)	coding protein	psRNATarget
BX821378.1	ncRNA:20   UCUUCUCGGAUAUCGAGUCA   1   *||||||||||||*|||||| targets:325   UGAAGAGCCUAUAUCUCAGU   344 Target Full Sequence	1.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL37ZE08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BN000024.1	ncRNA:20   UCUUCUCGGAUAUCGAGUCA   1   *||||||||||||*|||||| targets:309   UGAAGAGCCUAUAUCUCAGU   328 Target Full Sequence	1.5	TPA_exp: Arabidopsis thaliana bZIP protein AtbZIP12/EEL mRNA, complete predicted cds	NA	coding protein	psRNATarget
AY084668.1	ncRNA:20   UCUUCUCGGAUAUCGAGUCA   1   *||||||||||||*|||||| targets:342   UGAAGAGCCUAUAUCUCAGU   361 Target Full Sequence	1.5	Arabidopsis thaliana clone 114632 mRNA, complete sequence	NA	coding protein	psRNATarget
NM_129672.2	ncRNA:20   UCUUCUCGGAUAUCGAGUCA   1   *||||||||||||*|||||| targets:342   UGAAGAGCCUAUAUCUCAGU   361 Target Full Sequence	1.5	Arabidopsis thaliana Basic-leucine zipper (bZIP) transcription factor family protein (EEL), mRNA	Basic-leucine zipper (bZIP) transcription factor family protein(EEL)	coding protein	psRNATarget
AK118113.1	ncRNA:20   UCUUCUCGGAUAUCGAGUCA   1   *||||||||||||*|||||| targets:400   UGAAGAGCCUAUAUCUCAGU   419 Target Full Sequence	1.5	Arabidopsis thaliana At2g41070 mRNA for putative bZIP transcription factor AtbZIP12 / DPBF4, complete cds, clone: RAFL19-38-L08	NA	coding protein	psRNATarget
NM_180010.1	ncRNA:20   UCUUCUCGGAUAUCGAGUCA   1   *||||||||||||*|||||| targets:417   UGAAGAGCCUAUAUCUCAGU   436 Target Full Sequence	1.5	Arabidopsis thaliana Basic-leucine zipper (bZIP) transcription factor family protein (EEL), mRNA	Basic-leucine zipper (bZIP) transcription factor family protein(EEL)	coding protein	psRNATarget
NM_201926.2	ncRNA:20   UCUUCUCGGAUAUCGAGUCA   1   *||||||||||||*|||||| targets:452   UGAAGAGCCUAUAUCUCAGU   471 Target Full Sequence	1.5	Arabidopsis thaliana Basic-leucine zipper (bZIP) transcription factor family protein (EEL), mRNA	Basic-leucine zipper (bZIP) transcription factor family protein(EEL)	coding protein	psRNATarget
AF334209.1	ncRNA:20   UCUUCUCGGAUAUCGAGUCA   1   *||||||||||||*|||||| targets:417   UGAAGAGCCUAUAUCUCAGU   436 Target Full Sequence	1.5	Arabidopsis thaliana bZIP protein DPBF4 mRNA, complete cds	NA	coding protein	psRNATarget
AY096482.1	ncRNA:20   UCUUCUCGGAUAUCGAGUCA   1   **|||||||||||*|||||| targets:363   UAAAGAGCCUAUACCUCAGU   382 Target Full Sequence	2.5	Arabidopsis thaliana putative phosphatase 2A regulatory subunit B protein (At5g28900) mRNA, complete cds	NA	coding protein	psRNATarget
AY462122.1	ncRNA:20   UCUUCUCGGAUAUCGAGUCA   1   **|||||||||||*|||||| targets:478   UAAAGAGCCUAUACCUCAGU   497 Target Full Sequence	2.5	Arabidopsis thaliana protein phosphatase 2A beta (At5g28850) mRNA, complete cds	NA	coding protein	psRNATarget
BX830480.1	ncRNA:20   UCUUCUCGGAUAUCGAGUCA   1   **|||||||||||*|||||| targets:471   UAAAGAGCCUAUACCUCAGU   490 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB84ZF01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY063937.1	ncRNA:20   UCUUCUCGGAUAUCGAGUCA   1   **|||||||||||*|||||| targets:580   UAAAGAGCCUAUACCUCAGU   599 Target Full Sequence	2.5	Arabidopsis thaliana putative protein phosphatase 2A regulatory subunit B (At5g28900) mRNA, complete cds	NA	coding protein	psRNATarget
NM_122774.4	ncRNA:20   UCUUCUCGGAUAUCGAGUCA   1   **|||||||||||*|||||| targets:580   UAAAGAGCCUAUACCUCAGU   599 Target Full Sequence	2.5	Arabidopsis thaliana Calcium-binding EF-hand family protein mRNA	Calcium-binding EF-hand family protein(AT5G28900)	coding protein	psRNATarget
NM_122768.2	ncRNA:20   UCUUCUCGGAUAUCGAGUCA   1   **|||||||||||*|||||| targets:570   UAAAGAGCCUAUACCUCAGU   589 Target Full Sequence	2.5	Arabidopsis thaliana Calcium-binding EF-hand family protein mRNA	Calcium-binding EF-hand family protein(AT5G28850)	coding protein	psRNATarget
NM_180758.1	ncRNA:20   UCUUCUCGGAUAUCGAGUCA   1   **|||||||||||*|||||| targets:529   UAAAGAGCCUAUACCUCAGU   548 Target Full Sequence	2.5	Arabidopsis thaliana Calcium-binding EF-hand family protein mRNA	Calcium-binding EF-hand family protein(AT5G28850)	coding protein	psRNATarget
AY056110.1	ncRNA:20   UCUUCUCGGAUAUCGAGUCA   1   **|||||||||||*|||||| targets:529   UAAAGAGCCUAUACCUCAGU   548 Target Full Sequence	2.5	Arabidopsis thaliana AT5g28850/F7P1_30 mRNA, complete cds	NA	coding protein	psRNATarget