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BaseInfo

ncRNA ID	novel_gar_miR968
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr8:96777334-96777516 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588;SRR1029586
Length	21
Mature sequence(if miRNA)	163 - AAGGAUCAAUUUGCUCUUUGA - 183
Stem-loop(if miRNA)	--AAU          UUA      -       UU    UC    C            -------------------UUA  CAUUAUACGUCCAAAUGAGA      GAGUAAGUUG   CUUUUU UUAAAAA  UUAU  AUUU UACUAUUAAAAA                      GU                    U      ||||||||||   |||||| |||||||  ||||  |||| ||||||||||||                      ||                    A      CUCGUUUAAC   GAAAGA AAUUUUU  AGUA  UAAA AUGAUAAUUUUU                      AU                    U AGUUU          UAG      U       UU    GA    A            UACUGAACCAACUAUCUUACUG  UCUUCAAUGUGCACCAUGCA
Stem-loop sequence	AAUGAGUAAGUUGUUACUUUUUUUAAAAAUUUUAUUCAUUUCUACUAUUAAAAAUUAGUCAUUAUACGUCCAAAUGAGAUAUACGUACCACGUGUAACUUCUUAGUCAUUCUAUCAACCAAGUCAUUUUUUAAUAGUAAAAAUAGAUGAUUUUUUUAAUAGAAAGGAUCAAUUUGCUCUUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017754697.1	ncRNA:21   AGUUUCUCGUUUAACUAGGAA   1   ||||||||||||||||||=|| targets:1377   UCAAAGAGCAAAUUGAUCUUU   1397 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X2, mRNA	uncharacterized protein DDB_G0271670(LOC108456101)	coding protein	psRNATarget
XM_017754696.1	ncRNA:21   AGUUUCUCGUUUAACUAGGAA   1   ||||||||||||||||||=|| targets:1377   UCAAAGAGCAAAUUGAUCUUU   1397 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X1, mRNA	uncharacterized protein DDB_G0271670(LOC108456101)	coding protein	psRNATarget
XM_017789991.1	ncRNA:21   AGUUUCUCGUUUAACUAGGAA   1   *||||||*||||*|||||||| targets:1408   CCAAAGACCAAACUGAUCCUU   1428 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X6, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789990.1	ncRNA:21   AGUUUCUCGUUUAACUAGGAA   1   *||||||*||||*|||||||| targets:1411   CCAAAGACCAAACUGAUCCUU   1431 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X5, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789989.1	ncRNA:21   AGUUUCUCGUUUAACUAGGAA   1   *||||||*||||*|||||||| targets:1500   CCAAAGACCAAACUGAUCCUU   1520 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X3, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789988.1	ncRNA:21   AGUUUCUCGUUUAACUAGGAA   1   *||||||*||||*|||||||| targets:1596   CCAAAGACCAAACUGAUCCUU   1616 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X2, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789992.1	ncRNA:21   AGUUUCUCGUUUAACUAGGAA   1   *||||||*||||*|||||||| targets:1889   CCAAAGACCAAACUGAUCCUU   1909 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X7, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789987.1	ncRNA:21   AGUUUCUCGUUUAACUAGGAA   1   *||||||*||||*|||||||| targets:1888   CCAAAGACCAAACUGAUCCUU   1908 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X1, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017779595.1	ncRNA:21   AGUUUCUCGUUUAACUAGGAA   1   **|||||||||*||||||||* targets:515   GGAAAGAGCAACUUGAUCCUA   535 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum U1 small nuclear ribonucleoprotein A-like (LOC108477138), mRNA	U1 small nuclear ribonucleoprotein A-like(LOC108477138)	coding protein	psRNATarget