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BaseInfo

ncRNA ID	novel_gar_miR954
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr7:31691766-31691896 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	24
Mature sequence(if miRNA)	1 - GCUGAAAUGCUGAAAUUCUGGCAU - 24
Stem-loop(if miRNA)	--    A     UG   U  --------------U --   UU  GAGGACUUGUGAGCAAGCGAACGCUCAUU   GCUG AAUGC  AAA UC               G  GCA  UC                             G   |||| |||||  ||| ||               |  |||  ||                             G   UGGC UUACG  UUU AG               G  UGC  UA                             U AA    A     GU   U  CACGAGAAUGGACAA GU   --  GGGCUAGUAGUUGAAUCGUUUAGAUUGAU
Stem-loop sequence	GCUGAAAUGCUGAAAUUCUGGCAUUUCGAGGACUUGUGAGCAAGCGAACGCUCAUUGGUUAGUUAGAUUUGCUAAGUUGAUGAUCGGGAUCGUUGGAACAGGUAAGAGCACGAUUUUUGGCAUUACGGUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017756222.1	ncRNA:24   UACGGUCUUAAAGUCGUAAAGUCG   1   ||-==|||=||||||||*|||||| targets:358   AU-UUAGAGUUUCAGCACUUCAGC   380 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum zinc finger CCCH domain-containing protein 53-like (LOC108457257), mRNA	zinc finger CCCH domain-containing protein 53-like(LOC108457257)	coding protein	psRNATarget
XM_017786470.1	ncRNA:24   UACGGUCUUAAAGUCGUAAAGUCG   1   *|||*|*|||*||||||||||||= targets:17   CUGCAAAAAUCUCAGCAUUUCAGU   40 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum probable galactinol--sucrose galactosyltransferase 2 (LOC108483200), transcript variant X3, mRNA	probable galactinol--sucrose galactosyltransferase 2(LOC108483200)	coding protein	psRNATarget
XM_017786471.1	ncRNA:24   UACGGUCUUAAAGUCGUAAAGUCG   1   *|||*|*|||*||||||||||||= targets:21   CUGCAAAAAUCUCAGCAUUUCAGU   44 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum probable galactinol--sucrose galactosyltransferase 2 (LOC108483200), transcript variant X4, mRNA	probable galactinol--sucrose galactosyltransferase 2(LOC108483200)	coding protein	psRNATarget
XM_017786468.1	ncRNA:24   UACGGUCUUAAAGUCGUAAAGUCG   1   *|||*|*|||*||||||||||||= targets:20   CUGCAAAAAUCUCAGCAUUUCAGU   43 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum probable galactinol--sucrose galactosyltransferase 2 (LOC108483200), transcript variant X1, mRNA	probable galactinol--sucrose galactosyltransferase 2(LOC108483200)	coding protein	psRNATarget