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BaseInfo

ncRNA ID	novel_gar_miR949
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr7:34727038-34727238 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	23
Mature sequence(if miRNA)	1 - UAGGGUUUAGGGUUUAGGAUUUA - 23
Stem-loop(if miRNA)	---GG      G      UU   U G      G    UGGUA    G  A  GU    --      -UUCA       -AGG   UAUGUUAUCAGGGUUUAA      UUUAAG UUUGGG  UUA G UUUAGG UUUA     UAGG UC GA  CUUA  GCACUA     AGGAUUU    GGU                  G      |||||| ||||||  ||| | |||||| ||||     |||| || ||  ||||  ||||||     |||||||    |||      GGAUUU GGAUUU  GAU C GAAUCC GGAU     AUUU GG CU  GGAU  UGUGAU     UUUUAGA    CGA                  G AUUUA      G      GG   U G      G    UUGGG    G  A  UG    UU      UUUUA       AUAA   AUGGUCGAUUUUGGGAUU
Stem-loop sequence	GGUUUAAGGUUUGGGUUUUAUGGUUUAGGGUUUAUGGUAUAGGGUCAGAGUCUUAGCACUAUUCAAGGAUUUAGGGGUUAUGUUAUCAGGGUUUAAGGUUAGGGUUUUAGCUGGUAAGCAAUAAGAUUUUAUUUUUAGUGUUUUAGGGUUCAGGGUUUAGGGUUUAGGGCCUAAGGCUUAGGGUUUAGGGUUUAGGAUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017769888.1	ncRNA:23   AUUUAGGAUUUGGGAUUUGGGAU   1   *||||*|||||||||||||||*| targets:96   GAAAUACUAAACCCUAAACCCCA   118 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum nicotinamide/nicotinic acid mononucleotide adenylyltransferase (LOC108469009), transcript variant X1, mRNA	nicotinamide/nicotinic acid mononucleotide adenylyltransferase(LOC108469009)	coding protein	psRNATarget
XM_017769889.1	ncRNA:23   AUUUAGGAUUUGGGAUUUGGGAU   1   *||||*|||||||||||||||*| targets:96   GAAAUACUAAACCCUAAACCCCA   118 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum nicotinamide/nicotinic acid mononucleotide adenylyltransferase (LOC108469009), transcript variant X2, mRNA	nicotinamide/nicotinic acid mononucleotide adenylyltransferase(LOC108469009)	coding protein	psRNATarget
XM_017783079.1	ncRNA:23   AUUUAGGAUUUGGGAUUUGGGAU   1   |**=||=||||||||||||||*| targets:2   UCUGUCUUAAACCCUAAACCCCA   24 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum probable DEAD-box ATP-dependent RNA helicase 48 (LOC108480180), transcript variant X1, mRNA	probable DEAD-box ATP-dependent RNA helicase 48(LOC108480180)	coding protein	psRNATarget
XM_017783080.1	ncRNA:23   AUUUAGGAUUUGGGAUUUGGGAU   1   |**=||=||||||||||||||*| targets:2   UCUGUCUUAAACCCUAAACCCCA   24 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum probable DEAD-box ATP-dependent RNA helicase 48 (LOC108480180), transcript variant X2, mRNA	probable DEAD-box ATP-dependent RNA helicase 48(LOC108480180)	coding protein	psRNATarget
XM_017780855.1	ncRNA:23   AUUUAGGAUUUGGGAUUUGGGAU   1   |=||*==|||||||||||||||| targets:36   UGAAGUUUAAACCCUAAACCCUA   58 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum mitochondrial substrate carrier family protein E (LOC108478396), transcript variant X1, mRNA	mitochondrial substrate carrier family protein E(LOC108478396)	coding protein	psRNATarget
XM_017780856.1	ncRNA:23   AUUUAGGAUUUGGGAUUUGGGAU   1   |=||*==|||||||||||||||| targets:36   UGAAGUUUAAACCCUAAACCCUA   58 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum mitochondrial substrate carrier family protein E (LOC108478396), transcript variant X2, mRNA	mitochondrial substrate carrier family protein E(LOC108478396)	coding protein	psRNATarget
XM_017760830.1	ncRNA:23   AUUUAGGAUUUGGGAUUUGGGAU   1   *||||*=*||||||||||||||| targets:21   AAAAUAUAAAACCCUAAACCCUA   43 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum prohibitin-1, mitochondrial (LOC108461123), transcript variant X1, mRNA	prohibitin-1, mitochondrial(LOC108461123)	coding protein	psRNATarget
XM_017760831.1	ncRNA:23   AUUUAGGAUUUGGGAUUUGGGAU   1   *||||*=*||||||||||||||| targets:11   AAAAUAUAAAACCCUAAACCCUA   33 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum prohibitin-1, mitochondrial (LOC108461123), transcript variant X2, mRNA	prohibitin-1, mitochondrial(LOC108461123)	coding protein	psRNATarget
XM_017787034.1	ncRNA:23   AUUUAGGA---UUUGGGAUUUGGGAU   1   |***||||---||||||||||||||| targets:11   UCCCUCCUUGAAAACCCUAAACCCUA   36 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum mediator-associated protein 2 (LOC108483570), mRNA	mediator-associated protein 2(LOC108483570)	coding protein	psRNATarget