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BaseInfo

ncRNA ID	novel_gar_miR938
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr2:85112807-85112888 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029586
Length	24
Mature sequence(if miRNA)	59 - AGACAAUGUUUGGAACAUGGCAUC - 82
Stem-loop(if miRNA)	--     G   -AA      -    G G  A    ------    G   UGUCA UGU   GAGCAU GUCU G AC UGGC      AUCG C   ||||| |||   |||||| |||| | || ||||      ||||   ACGGU ACA   UUUGUA CAGA C UG ACCG      UAGC C CU     -   AGG      A    A G  -    AGAGUA    A
Stem-loop sequence	UGUCAGUGUAAGAGCAUGUCUGGGACAUGGCAUCGGCCACGAUAUGAGAGCCAGUGCAAGACAAUGUUUGGAACAUGGCAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017760295.1	ncRNA:24   CUACGGUACAAGGUUUGUAACAGA   1   *|||=*|||**||||||||||||| targets:792   UAUGUGAUGCACCAAACAUUGUCU   815 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum dnaJ protein ERDJ2A-like (LOC108460697), transcript variant X3, mRNA	dnaJ protein ERDJ2A-like(LOC108460697)	coding protein	psRNATarget
XM_017760296.1	ncRNA:24   CUACGGUACAAGGUUUGUAACAGA   1   *|||=*|||**||||||||||||| targets:837   UAUGUGAUGCACCAAACAUUGUCU   860 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum dnaJ protein ERDJ2A-like (LOC108460697), transcript variant X4, mRNA	dnaJ protein ERDJ2A-like(LOC108460697)	coding protein	psRNATarget
XM_017760293.1	ncRNA:24   CUACGGUACAAGGUUUGUAACAGA   1   *|||=*|||**||||||||||||| targets:914   UAUGUGAUGCACCAAACAUUGUCU   937 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum dnaJ protein ERDJ2A-like (LOC108460697), transcript variant X1, mRNA	dnaJ protein ERDJ2A-like(LOC108460697)	coding protein	psRNATarget
XM_017760294.1	ncRNA:24   CUACGGUACAAGGUUUGUAACAGA   1   *|||=*|||**||||||||||||| targets:985   UAUGUGAUGCACCAAACAUUGUCU   1008 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum dnaJ protein ERDJ2A-like (LOC108460697), transcript variant X2, mRNA	dnaJ protein ERDJ2A-like(LOC108460697)	coding protein	psRNATarget