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BaseInfo

ncRNA ID novel_gar_miR932
Species Gossypium arboreum
Class miRNA
Genome position Chr2:81386340-81386413 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586
Length 24
Mature sequence(if miRNA) 1 - AGUGACUAUGAUGUAGAUAGACAG - 24
Stem-loop(if miRNA) --   G   AU    UAGAU      U      --A G
  AGU ACU  GAUG     AGACAG UUAUUU   U A
  ||| |||  ||||     |||||| ||||||   |
  UCA UGA  UUGU     UUUGUU AAUAAA   G A
AG   G   AU    UUAGU      U      GUA A
Stem-loop sequence AGUGACUAUGAUGUAGAUAGACAGUUUAUUUAUGAAAGAUGAAAUAAUUUGUUUUGAUUUGUUUAAGUGACUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017772710.1
ncRNA:24   GACA---GAUAGAUGUAGUAUCAGUGA   1
  ||*|---|||||*|||||||*||||||
targets:176   CUUUAGGCUAUCAACAUCAUUGUCACU   202

2.5 PREDICTED: Gossypium arboreum two-component response regulator ARR12-like (LOC108471118), mRNA two-component response regulator ARR12-like(LOC108471118) coding protein psRNATarget
XM_017788626.1
ncRNA:24   GACAGAUAGAUGUAGUAUCAGUGA   1
  =|||-|||**|||||||||||||*
targets:85   UUGU-UAUGAACAUCAUAGUCACC   107

3.0 PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At5g04780 (LOC108484723), mRNA pentatricopeptide repeat-containing protein At5g04780(LOC108484723) coding protein psRNATarget