Search result

BaseInfo

ncRNA ID	novel_gar_miR917
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr6:78418865-78419079 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	24
Mature sequence(if miRNA)	192 - UGAGGGAACUGUGCGUGCCUAAAG - 215
Stem-loop(if miRNA)	--         UG   G               G       ----UUA    C   A    G    U           C       U A     AUG           CC   UUGGGUAUG  UAG UCUCUUAAGGUUUUG CACCCUU       CCUC AUA AUUC AAUC GCAUCCUUACA ACAAAGG G GCACU   UAGAACAGAUA  A   |||||||||  ||| ||||||||||||||| |||||||       |||| ||| |||| |||| ||||||||||| ||||||| | |||||   |||||||||||  A   AAUCCGUGC  GUC AGGGAGUUCCAAAAU GUGGGAG       GGAG UGU UAAG UUGG UGUAGGAGUGU UGUUUUC C CGUGA   GUCUUGUCUAU  A GA         GU   A               G       UUCACGA    A   C    G    C           A       U A     GCU           CU
Stem-loop sequence	UUGGGUAUGUGUAGGUCUCUUAAGGUUUUGGCACCCUUUUACCUCCAUAAAUUCGAAUCUGCAUCCUUACACACAAAGGUGAGCACUAUGUAGAACAGAUACCAAAUCUAUCUGUUCUGUCGAGUGCACUCUUUUGUAUGUGAGGAUGUCGGUUGGAAUCUGUAGAGGAGCACUUGAGGGUGGUAAAACCUUGAGGGAACUGUGCGUGCCUAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017778774.1	ncRNA:24   GAAAUCCGUGCGUGUCAAGGGAGU   1   ***|*||=|||||||||||=|||| targets:277   ACCUCGGUACGCACAGUUCUCUCA   300 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum putative glycerol-3-phosphate transporter 4 (LOC108476544), mRNA	putative glycerol-3-phosphate transporter 4(LOC108476544)	coding protein	psRNATarget
XM_017778773.1	ncRNA:24   GAAAUCCGUGCGUGUCAAGGGAGU   1   ***|*||=|||||||||||=|||| targets:1496   ACCUCGGUACGCACAGUUCUCUCA   1519 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum putative glycerol-3-phosphate transporter 4 (LOC108476543), transcript variant X2, mRNA	putative glycerol-3-phosphate transporter 4(LOC108476543)	coding protein	psRNATarget
XM_017778772.1	ncRNA:24   GAAAUCCGUGCGUGUCAAGGGAGU   1   ***|*||=|||||||||||=|||| targets:1539   ACCUCGGUACGCACAGUUCUCUCA   1562 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum putative glycerol-3-phosphate transporter 4 (LOC108476543), transcript variant X1, mRNA	putative glycerol-3-phosphate transporter 4(LOC108476543)	coding protein	psRNATarget