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BaseInfo

ncRNA ID novel_gar_miR916
Species Gossypium arboreum
Class miRNA
Genome position Chr12:134383939-134384020 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586
Length 21
Mature sequence(if miRNA) 1 - UUGGGAUGCAGAUUACCUCUU - 21
Stem-loop(if miRNA) --U               UG   U      -  -AAU  CUU
   GGGUAAUCUGCAUCC  AGG UUGGAU CA    GG   G
   |||||||||||||||  ||| |||||| ||    ||
   UCCAUUAGACGUAGG  UCC GACCUA GU    CC   U
UUC               GU   U      C  CGUU  CUU
Stem-loop sequence UGGGUAAUCUGCAUCCUGAGGUUUGGAUCAAAUGGCUUGUUUCCCUUGCUGCAUCCAGUCCUUGGGAUGCAGAUUACCUCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017768413.1
ncRNA:21   UUCUCCAUUAGACGUAGGGUU   1
  *||*||*|||||||||||||*
targets:547   CAGCGGCAAUCUGCAUCCCAC   567

3.0 PREDICTED: Gossypium arboreum uncharacterized LOC108467681 (LOC108467681), transcript variant X1, mRNA uncharacterized LOC108467681(LOC108467681) coding protein psRNATarget