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BaseInfo

ncRNA ID ath-miRf11032-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - UCGCGAGCAACUUCAGCAAGU - NA
Stem-loop(if miRNA) GU    CU   C                 GA ----UUU   U
  AGCU  UCG GAGCAACUUCAGCAAGU  C       GCU C
  ||||  ||| |||||||||||||||||  |       ||| A
  UCGA  GGC UUCGUUGAAGUCGUUCG  G       CGA U
CC    -U   -                 UC UCUUCUC   C
Stem-loop sequence GUAGCUCUUCGCGAGCAACUUCAGCAAGUGACUUUGCUUCAUCAGCCUCUUCUGCUGCUUGCUGAAGUUGCUUCGGUAGCUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK228775.1
ncRNA:21   UGAACGACUUCAACGAGCGCU   1
  |||||||||||||||||||||
targets:1739   ACUUGCUGAAGUUGCUCGCGA   1759

0.0 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-09-O16 NA coding protein psRNATarget
NM_001336076.1
ncRNA:21   UGAACGACUUCAACGAGCGCU   1
  |||||||||||||||||||||
targets:1988   ACUUGCUGAAGUUGCUCGCGA   2008

0.0 Arabidopsis thaliana WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827) (WEB1), mRNA WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827)(WEB1) coding protein psRNATarget
NM_128214.3
ncRNA:21   UGAACGACUUCAACGAGCGCU   1
  |||||||||||||||||||||
targets:1969   ACUUGCUGAAGUUGCUCGCGA   1989

0.0 Arabidopsis thaliana WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827) (WEB1), mRNA WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827)(WEB1) coding protein psRNATarget
NM_123155.1
ncRNA:21   UGAACGACUUCAACGAGCGCU   1
  |||||=|||||||||||||||
targets:296   ACUUGUUGAAGUUGCUCGCGA   316

1.0 Arabidopsis thaliana GroES-like family protein partial mRNA GroES-like family protein(AT5G37960) coding protein psRNATarget
BT000498.1
ncRNA:21   UGAACGACUUCAACGAGCGCU   1
  |||||=*||||||||||||||
targets:1038   ACUUGUCGAAGUUGCUCGCGA   1058

2.0 Arabidopsis thaliana quinone oxidoreductase -like protein (At5g37940/K18L3_100) mRNA, complete cds NA coding protein psRNATarget
AY056378.1
ncRNA:21   UGAACGACUUCAACGAGCGCU   1
  |||||=*||||||||||||||
targets:1054   ACUUGUCGAAGUUGCUCGCGA   1074

2.0 Arabidopsis thaliana AT5g37940/K18L3_100 mRNA, complete cds NA coding protein psRNATarget
AY085144.1
ncRNA:21   UGAACGACUUCAACGAGCGCU   1
  |||||=*||||||||||||||
targets:1049   ACUUGUCGAAGUUGCUCGCGA   1069

2.0 Arabidopsis thaliana clone 13314 mRNA, complete sequence NA coding protein psRNATarget
NM_123153.4
ncRNA:21   UGAACGACUUCAACGAGCGCU   1
  |||||=*||||||||||||||
targets:1226   ACUUGUCGAAGUUGCUCGCGA   1246

2.0 Arabidopsis thaliana Zinc-binding dehydrogenase family protein mRNA Zinc-binding dehydrogenase family protein(AT5G37940) coding protein psRNATarget
BT008316.1
ncRNA:21   UGAACGACUUCAACGAGCGCU   1
  |||||=*|||||||||||||*
targets:1038   ACUUGUCGAAGUUGCUCGCGU   1058

3.0 Arabidopsis thaliana At5g38000 gene, complete cds NA coding protein psRNATarget
AK228065.1
ncRNA:21   UGAACGACUUCAACGAGCGCU   1
  |||||=*|||||||||||||*
targets:1060   ACUUGUCGAAGUUGCUCGCGU   1080

3.0 Arabidopsis thaliana mRNA for oxidoreductase like protein, complete cds, clone: RAFL14-55-O06 NA coding protein psRNATarget
NM_001344223.1
ncRNA:21   UGAACGACUUCAACGAGCGCU   1
  |||||=*|||||||||||||*
targets:1100   ACUUGUCGAAGUUGCUCGCGU   1120

3.0 Arabidopsis thaliana Zinc-binding dehydrogenase family protein mRNA Zinc-binding dehydrogenase family protein(AT5G38000) coding protein psRNATarget
NM_123159.3
ncRNA:21   UGAACGACUUCAACGAGCGCU   1
  |||||=*|||||||||||||*
targets:1198   ACUUGUCGAAGUUGCUCGCGU   1218

3.0 Arabidopsis thaliana Zinc-binding dehydrogenase family protein mRNA Zinc-binding dehydrogenase family protein(AT5G38000) coding protein psRNATarget
AB290930.1
ncRNA:21   UGAACGACUUCAACGAGCGCU   1
  *|||||**||||||||||||=
targets:2420   UCUUGCACAAGUUGCUCGCGG   2440

3.0 Arabidopsis thaliana ARK3 mRNA for armadillo repeat kinesin3, complete cds NA coding protein psRNATarget
NM_001198043.1
ncRNA:21   UGAACGACUUCAACGAGCGCU   1
  *|||||**||||||||||||=
targets:2615   UCUUGCACAAGUUGCUCGCGG   2635

3.0 Arabidopsis thaliana armadillo repeat kinesin 3 (ARK3), mRNA armadillo repeat kinesin 3(ARK3) coding protein psRNATarget
AF159052.1
ncRNA:21   UGAACGACUUCAACGAGCGCU   1
  *|||||**||||||||||||=
targets:2610   UCUUGCACAAGUUGCUCGCGG   2630

3.0 Arabidopsis thaliana kinesin-like protein mRNA, complete cds NA coding protein psRNATarget
NM_101115.3
ncRNA:21   UGAACGACUUCAACGAGCGCU   1
  *|||||**||||||||||||=
targets:2646   UCUUGCACAAGUUGCUCGCGG   2666

3.0 Arabidopsis thaliana armadillo repeat kinesin 3 (ARK3), mRNA armadillo repeat kinesin 3(ARK3) coding protein psRNATarget
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