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BaseInfo

ncRNA ID novel_gar_miR889
Species Gossypium arboreum
Class miRNA
Genome position Chr6:88619660-88619769 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588
Length 24
Mature sequence(if miRNA) 87 - AGGAAAUGGGUGAAUUAAGGGCAA - 110
Stem-loop(if miRNA) --A        - U     -     C   A     AA   UU  AAAUUAA   AAU
   GGAAAUGG G GAAUU AAGGG AAA UUGGA  AUU  CA       CUA   A
   |||||||| | ||||| ||||| ||| |||||  |||  ||       |||
   CUUUUACU C CUUAA UUCUC UUU GAUCU  UAA  GU       GGU   A
CUA        U U     C     -   A     -A   GG  AAACCAG   AAA
Stem-loop sequence AGGAAAUGGGUGAAUUAAGGGCAAAAUUGGAAAAUUUUCAAAAUUAACUAAAUAAAAAUGGGACCAAAUGGGAAUAUCUAGAUUUCUCUUCAAUUCUCUUCAUUUUCAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017784963.1
ncRNA:24   AACGGGAAUUAAGUGGGUAAAGGA   1
  ***=||||=*||||||||||||||
targets:20   AAAUCCUUGCUUCACCCAUUUCCU   43

2.0 PREDICTED: Gossypium arboreum (+)-delta-cadinene synthase isozyme A-like (LOC108481896), mRNA (+)-delta-cadinene synthase isozyme A-like(LOC108481896) coding protein psRNATarget