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BaseInfo

ncRNA ID	novel_gar_miR886
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr6:120305396-120305526 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588;SRR1029586
Length	21
Mature sequence(if miRNA)	1 - AAGGAUCAGUUUGCUCUUUGA - 21
Stem-loop(if miRNA)	--                     U          UC             AUUAA        G GA   AAAGAGCAAAUUGGUCUUUUU GUUAAAAAUU  AUCCAUUUCUACU     AAAUUGGU U  C   ||||||||||||||||||||| ||||||||||  |||||||||||||     |||||||| |  U   UUUCUCGUUUGACUAGGAAGA CAAUUUUUAA  UAGGUAAAGAUGA     UUUGACCA G  G AG                     -          GA             -CAAC        G UA
Stem-loop sequence	AAAGAGCAAAUUGGUCUUUUUUGUUAAAAAUUUCAUCCAUUUCUACUAUUAAAAAUUGGUGUGACUGAUGGACCAGUUUCAACAGUAGAAAUGGAUAGAAUUUUUAACAGAAGGAUCAGUUUGCUCUUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017789991.1	ncRNA:21   AGUUUCUCGUUUGACUAGGAA   1   *||||||*||||||||||||| targets:1408   CCAAAGACCAAACUGAUCCUU   1428 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X6, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789990.1	ncRNA:21   AGUUUCUCGUUUGACUAGGAA   1   *||||||*||||||||||||| targets:1411   CCAAAGACCAAACUGAUCCUU   1431 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X5, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789989.1	ncRNA:21   AGUUUCUCGUUUGACUAGGAA   1   *||||||*||||||||||||| targets:1500   CCAAAGACCAAACUGAUCCUU   1520 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X3, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789988.1	ncRNA:21   AGUUUCUCGUUUGACUAGGAA   1   *||||||*||||||||||||| targets:1596   CCAAAGACCAAACUGAUCCUU   1616 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X2, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789992.1	ncRNA:21   AGUUUCUCGUUUGACUAGGAA   1   *||||||*||||||||||||| targets:1889   CCAAAGACCAAACUGAUCCUU   1909 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X7, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789987.1	ncRNA:21   AGUUUCUCGUUUGACUAGGAA   1   *||||||*||||||||||||| targets:1888   CCAAAGACCAAACUGAUCCUU   1908 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X1, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017790358.1	ncRNA:21   AGUUUCUCGUUUGACUAGGAA   1   **||||||*|||||||||||* targets:2214   AGAAAGAGAAAACUGAUCCUG   2234 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein RRC1-like (LOC108486345), transcript variant X5, mRNA	protein RRC1-like(LOC108486345)	coding protein	psRNATarget
XM_017790354.1	ncRNA:21   AGUUUCUCGUUUGACUAGGAA   1   **||||||*|||||||||||* targets:2389   AGAAAGAGAAAACUGAUCCUG   2409 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein RRC1-like (LOC108486345), transcript variant X1, mRNA	protein RRC1-like(LOC108486345)	coding protein	psRNATarget
XM_017790357.1	ncRNA:21   AGUUUCUCGUUUGACUAGGAA   1   **||||||*|||||||||||* targets:2389   AGAAAGAGAAAACUGAUCCUG   2409 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein RRC1-like (LOC108486345), transcript variant X4, mRNA	protein RRC1-like(LOC108486345)	coding protein	psRNATarget
XM_017790356.1	ncRNA:21   AGUUUCUCGUUUGACUAGGAA   1   **||||||*|||||||||||* targets:2420   AGAAAGAGAAAACUGAUCCUG   2440 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein RRC1-like (LOC108486345), transcript variant X3, mRNA	protein RRC1-like(LOC108486345)	coding protein	psRNATarget
XM_017790355.1	ncRNA:21   AGUUUCUCGUUUGACUAGGAA   1   **||||||*|||||||||||* targets:2421   AGAAAGAGAAAACUGAUCCUG   2441 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein RRC1-like (LOC108486345), transcript variant X2, mRNA	protein RRC1-like(LOC108486345)	coding protein	psRNATarget