Search result

BaseInfo

ncRNA ID	novel_gar_miR884
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr6:120726741-120726812 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588;SRR3180715;SRR3180719;SRR3180720
Length	21
Mature sequence(if miRNA)	1 - UGCCAAAGGAGAGUUGCCCUG - 21
Stem-loop(if miRNA)	--     C     A   A       A    -U   UA   GGGCA CUCUC CUU GGCAGGU AUGG  GCA  U   ||||| ||||| ||| ||||||| ||||  |||   CCCGU GAGAG GAA CCGUUCA UACC  UGU  A GU     U     -   A       G    CU   UU
Stem-loop sequence	GGGCACCUCUCACUUAGGCAGGUAAUGGUGCAUAUAUUUGUUCCCAUGACUUGCCAAAGGAGAGUUGCCCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017794338.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =*||||||*|||||||||||| targets:879   UUGGGCAAAUCUCCUUUGGCA   899 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108489657), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC108489657)	coding protein	psRNATarget
XM_017787615.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =*||||||*|||||||||||| targets:900   UCGGGCAAAUCUCCUUUGGCA   920 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108484013), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC108484013)	coding protein	psRNATarget
XM_017794339.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =*||||||*|||||||||||| targets:957   UUGGGCAAAUCUCCUUUGGCA   977 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108489657), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC108489657)	coding protein	psRNATarget
XM_017794338.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =||||||**|||||||||||| targets:934   UAGGGCACAUCUCCUUUGGCA   954 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108489657), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC108489657)	coding protein	psRNATarget
XM_017787615.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =**|||||*|||||||||||| targets:860   UUCGGCAAAUCUCCUUUGGCA   880 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108484013), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC108484013)	coding protein	psRNATarget
XM_017794339.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =||||||**|||||||||||| targets:1012   UAGGGCACAUCUCCUUUGGCA   1032 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108489657), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC108489657)	coding protein	psRNATarget
XM_017764385.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =|*|||||||||*|||||||| targets:888   UAAGGCAACUCUGCUUUGGCA   908 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At1g62350-like (LOC108464221), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At1g62350-like(LOC108464221)	coding protein	psRNATarget