| ncRNA ID | novel_gar_miR879 |
| Species | Gossypium arboreum |
| Class | miRNA |
| Genome position | Chr6:97237196-97237428 [+] |
| Reference genome | Gossypium_arboreum_v1.0 |
| Source | SRR1029588;SRR1029586 |
| Length | 21 |
| Mature sequence(if miRNA) | 213 - AAGAGGACAAUACUGGCCUAU - 233 |
| Stem-loop(if miRNA) |
--AA UG A C GU C U U - UA U C -- C UA CAUAUAAGAGCCAU ---CU G GC GUAUUGU CUCUUUG AU CUA CGGCUUC CAAG AUUUGUCA CUU AAG GUGC UCU C AGGUUCAAACC AGGACCUCCU UUUUACAA AUG U || ||||||| ||||||| || ||| ||||||| |||| |||||||| ||| ||| |||| ||| | ||||||||||| |||||||||| |||||||| ||| CG CAUAACA GAGAAAC UA GGU GCCGAGG GUUC UAAACAGU GGA UUC CACG AGA G UCCAGGUUUGG UUUUGGAGGA AAAGUGUU UAC A UAUC GU G C UG A U C U -- - U AC A -- -------------- UAGUU C |
| Stem-loop sequence | AAGCUGGUAUUGUACUCUUUGCAUGUCUACCGGCUUCUCAAGUAUUUGUCACUUUAAAGUGUGCCUCUCCAGGUUCAAACCUAAGGACCUCCUCAUAUAAGAGCCAUUUUUACAACUAUGGUACCAUUUGAUUUGUGAAAAGGAGGUUUUGGUUUGGACCUAGCAAGAUGCACCUUAGGUUGACAAAUCCUUGUGGAGCCGAUGGGUAUCCAAAGAGGACAAUACUGGCCUAU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_017764507.1 |
|
3.0 | PREDICTED: Gossypium arboreum MLO-like protein 1 (LOC108464290), transcript variant X3, mRNA | MLO-like protein 1(LOC108464290) | coding protein | psRNATarget | |||||||||
| XM_017764505.1 |
|
3.0 | PREDICTED: Gossypium arboreum MLO-like protein 1 (LOC108464290), transcript variant X1, mRNA | MLO-like protein 1(LOC108464290) | coding protein | psRNATarget | |||||||||
| XM_017764506.1 |
|
3.0 | PREDICTED: Gossypium arboreum MLO-like protein 1 (LOC108464290), transcript variant X2, mRNA | MLO-like protein 1(LOC108464290) | coding protein | psRNATarget |