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BaseInfo

ncRNA ID novel_gar_miR861
Species Gossypium arboreum
Class miRNA
Genome position Chr5:19660984-19661033 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588
Length 24
Mature sequence(if miRNA) 27 - CGUGUCUCAGGUUGUGUGGGCAUU - 50
Stem-loop(if miRNA) --  A         -A        AC
  UG CUUACACAG  UGAGACAC  G
  || |||||||||  ||||||||
  AC GGGUGUGUU  ACUCUGUG  C
UU  -         GG        CU
Stem-loop sequence UGACUUACACAGAUGAGACACACGCUCGUGUCUCAGGUUGUGUGGGCAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017786198.1
ncRNA:24   UUAC-----GGGUGUGUUGGACUCUGUGC   1
  |=||-----=||*|||||||||||||||*
targets:3246   AGUGGAUUUUCCCCACAACCUGAGACACU   3274

2.0 PREDICTED: Gossypium arboreum epidermal growth factor receptor substrate 15 (LOC108483024), mRNA epidermal growth factor receptor substrate 15(LOC108483024) coding protein psRNATarget