Search result

BaseInfo

ncRNA ID novel_gar_miR858
Species Gossypium arboreum
Class miRNA
Genome position Chr2:5903552-5903742 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586
Length 24
Mature sequence(if miRNA) 1 - AGGACCGCUGUUAGGGAGGUAACA - 24
Stem-loop(if miRNA) --              UUA      C               A    C              U      AUU   UGG   GAAAAUA     UU       U
  UUACUUUCCUGACG   GUCCUA GUGGUAGUCCAAAUG AUUU UAAAUGCCAACUUG AUGUCU   UGC   GAU       AGUUU  AAUUAAA A
  ||||||||||||||   |||||| ||||||||||||||| |||| |||||||||||||| ||||||   |||   |||       |||||  |||||||
  AAUGGAGGGAUUGU   CAGGAU CACCAUCAGGUUUAC UAAA AUUUACGGUUGAAU UACAGG   AUG   CUA       UCAGG  UUAAUUU A
AC              CGC      A               C    -              C      ---   -UA   -------     -U       A
Stem-loop sequence UUACUUUCCUGACGUUAGUCCUACGUGGUAGUCCAAAUGAAUUUCUAAAUGCCAACUUGUAUGUCUAUUUGCUGGGAUGAAAAUAAGUUUUUAAUUAAAUAAAUUUAAUUUGGACUAUCAUGUAGGACAUCUAAGUUGGCAUUUAAAAUCCAUUUGGACUACCACAUAGGACCGCUGUUAGGGAGGUAACA