ncRNA ID | novel_gar_miR856 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr5:7442992-7443178 [-] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR1029588 |
Length | 24 |
Mature sequence(if miRNA) | 164 - AAUAAGCAGAUUGGUUAAUUCUGU - 187 |
Stem-loop(if miRNA) |
--AAUA             A  C   G     A                        C  -C    GC  A     CAAC   ACAA   C     AC       AGCAGAUUGGUUA UU UGU AAAAA UUCAUUCAUUUUUACUGUUAAAAA UA  CGUA  UG CAAAA    UGG    UUA AUGUG  A       ||||||||||||| || ||| ||||| |||||||||||||||||||||||| ||  ||||  || |||||    |||    ||| |||||       UCGUUUGACUAGU AA ACA UUUUU AAGUAGGUAAAGAUGACAAUUUUU AU  GUAU  AC GUUUU    ACU    AAU UACAC  U AGUUUC             A  A   A     A                        A  AA    AU  -     ----   ---C   A     CG |
Stem-loop sequence | AAUAAGCAGAUUGGUUAAUUCUGUGAAAAAAUUCAUUCAUUUUUACUGUUAAAAACUACCGUAGCUGACAAAACAACUGGACAAUUACAUGUGACAUGCCACAUAUAACUCAUUUUGCAUAUAUGAAUAAUUUUUAACAGUAGAAAUGGAUGAAAUUUUUAACAAAAAUGAUCAGUUUGCUCUUUGA |