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BaseInfo

ncRNA ID novel_gar_miR845
Species Gossypium arboreum
Class miRNA
Genome position Chr4:64644654-64644709 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588
Length 24
Mature sequence(if miRNA) 33 - AUCCUCUGAAUAUGUGCAGGGCAU - 56
Stem-loop(if miRNA) --     UC         GA      UU
  GCUUU  CGUAUGUUU  AGGAUU  A
  |||||  |||||||||  ||||||  U
  CGGGA  GUGUAUAAG  UCCUAA  C
UA     -C         UC      CU
Stem-loop sequence GCUUUUCCGUAUGUUUGAAGGAUUUUAUCUCAAUCCUCUGAAUAUGUGCAGGGCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017784616.1
ncRNA:24   UACGGGACGUGUAUAAGUCUCCUA   1
  |*|=||||||*||||||||||*||
targets:2646   AAGUCCUGCAGAUAUUCAGAGCAU   2669

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108481490 (LOC108481490), mRNA uncharacterized LOC108481490(LOC108481490) coding protein psRNATarget