ncRNA ID | ath-miR833a-3p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr1:29525151-29525337 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 115 - UAGACCGAUGUCAACAAACAAG - 136 |
Stem-loop(if miRNA) |
----  AC    A  GUAC     C     G    C     A          G             U  -                  AA    C  U     GG  GUAG UG    UCUUA AGAUG UGAU GUGAA ACAAACGGAG AGUUUGUUUGUUG AC UCGGUCUAGUUCAAACCA  ACAU UU G     ||  |||| ||    ||||| ||||| |||| ||||| |||||||||| ||||||||||||| || ||||||||||||||||||  |||| ||     CC  CGUC GC    AGAAU UCUAC ACUA CACUU UGUUUGCUUC UCGAACAAACAAC UG AGCCAGAUCGAGUUUGGU  UGUA AA C CUCA  -A    -  --AA     U     A    C     A          G             -  U                  -A    U  A |
Stem-loop sequence | GGACGUAGAUGGUACUCUUACAGAUGGUGAUCGUGAAAACAAACGGAGGAGUUUGUUUGUUGUACUCGGUCUAGUUCAAACCAAAACAUCUUUGCAAAUAUGUAUGGUUUGAGCUAGACCGAUGUCAACAAACAAGCUGCUUCGUUUGUAUUCACCAUCAACAUCUUUAAGAAACGCUGCACCACUC |
1 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
2 | PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007). |