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BaseInfo

ncRNA ID ath-miR833a-3p
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:29525151-29525337 [+]
Reference genome TAIR10
Source miRBase
Length 22
Mature sequence(if miRNA) 115 - UAGACCGAUGUCAACAAACAAG - 136
Stem-loop(if miRNA) ----  AC    A  GUAC     C     G    C     A          G             U  -                  AA    C  U
    GG  GUAG UG    UCUUA AGAUG UGAU GUGAA ACAAACGGAG AGUUUGUUUGUUG AC UCGGUCUAGUUCAAACCA  ACAU UU G
    ||  |||| ||    ||||| ||||| |||| ||||| |||||||||| ||||||||||||| || ||||||||||||||||||  |||| ||
    CC  CGUC GC    AGAAU UCUAC ACUA CACUU UGUUUGCUUC UCGAACAAACAAC UG AGCCAGAUCGAGUUUGGU  UGUA AA C
CUCA  -A    -  --AA     U     A    C     A          G             -  U                  -A    U  A
Stem-loop sequence GGACGUAGAUGGUACUCUUACAGAUGGUGAUCGUGAAAACAAACGGAGGAGUUUGUUUGUUGUACUCGGUCUAGUUCAAACCAAAACAUCUUUGCAAAUAUGUAUGGUUUGAGCUAGACCGAUGUCAACAAACAAGCUGCUUCGUUUGUAUUCACCAUCAACAUCUUUAAGAAACGCUGCACCACUC

Reference

1 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
2 PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes";
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC;
PLoS One. 2:e219(2007).