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BaseInfo

ncRNA ID	novel_gar_miR839
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr10:69416466-69416554 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588;SRR3180715;SRR3180720;SRR3180721;SRR1029586
Length	21
Mature sequence(if miRNA)	69 - UUGAGCCGCGCCAAUAUCACU - 89
Stem-loop(if miRNA)	--C          A         C  A  -  -GA       A       GAUGUUGGUG GGUUCAAUC GA GA CG   UUUACGA UUGA    |||||||||| ||||||||| || || ||   ||||||| |||U    CUAUAACCGC CCGAGUUAG CU CU GC   AAAUGCU GACU UCA          G         A  -  A  AUA       -
Stem-loop sequence	CGAUGUUGGUGAGGUUCAAUCCGAAGACGGAUUUACGAAUUGAUUCAGUCGUAAAAUACGAUCUCAGAUUGAGCCGCGCCAAUAUCACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017782902.1	ncRNA:21   UCACUAUAACCGCGCCGAGUU   1   |*||||||||||||||||||| targets:1779   AUUGAUAUUGGCGCGGCUCAA   1799 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum scarecrow-like protein 22 (LOC108480007), transcript variant X2, mRNA	scarecrow-like protein 22(LOC108480007)	coding protein	psRNATarget
XM_017782901.1	ncRNA:21   UCACUAUAACCGCGCCGAGUU   1   |*||||||||||||||||||| targets:1799   AUUGAUAUUGGCGCGGCUCAA   1819 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum scarecrow-like protein 22 (LOC108480007), transcript variant X1, mRNA	scarecrow-like protein 22(LOC108480007)	coding protein	psRNATarget
XM_017781712.1	ncRNA:21   UCACUAUAACCGCGCCGAGUU   1   ||*|||||||||||||||||| targets:1266   AGGGAUAUUGGCGCGGCUCAA   1286 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum scarecrow-like protein 6 (LOC108479239), mRNA	scarecrow-like protein 6(LOC108479239)	coding protein	psRNATarget
XM_017787403.1	ncRNA:21   UCACUAUAACCGCGCCGAGUU   1   ||*|||||||||||||||||| targets:1269   AGGGAUAUUGGCGCGGCUCAA   1289 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum scarecrow-like protein 6 (LOC108483812), mRNA	scarecrow-like protein 6(LOC108483812)	coding protein	psRNATarget
XM_017781711.1	ncRNA:21   UCACUAUAACCGCGCCGAGUU   1   ||*|||||||||||||||||| targets:1375   AGGGAUAUUGGCGCGGCUCAA   1395 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum scarecrow-like protein 6 (LOC108479238), mRNA	scarecrow-like protein 6(LOC108479238)	coding protein	psRNATarget
XM_017768217.1	ncRNA:21   UCACUAUAACCGCGCCGAGUU   1   *|*|||||||||||||||||| targets:1729   CGGGAUAUUGGCGCGGCUCAA   1749 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum scarecrow-like protein 27 (LOC108467555), mRNA	scarecrow-like protein 27(LOC108467555)	coding protein	psRNATarget