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BaseInfo

ncRNA ID ath-miRf11023-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 25
Mature sequence(if miRNA) NA - CCUUUAAGCUCCUCGAUAUCAUCAU - NA
Stem-loop(if miRNA)   AA            CU    -   --AU  UC       ACACU  -      GAGGAAGGAGAUCCAGUGGGCGUUUCUUU
CG  ACAGCCUUUAAG  CCUC GAU    CA  AUUCGUG     CU UGCUGC                             U
||  ||||||||||||  |||| |||    ||  |||||||     || ||||||                             U
GC  UGUCGGAGGUUC  GGAG CUA    GU  UGAGCAC     AG GGCCUG                             C
  GG            -U    A   CUUC  UA       ----C  U      UACUCAGCGCUUCUCCGAACCGACGCAUU
Stem-loop sequence CGAAACAGCCUUUAAGCUCCUCGAUAUCAUCAUUCGUGACACUCUUGCUGCGAGGAAGGAGAUCCAGUGGGCGUUUCUUUUUCUUACGCAGCCAAGCCUCUUCGCGACUCAUGUCCGGUGACCACGAGUAUUGCUUCAUCAGAGGUCUUGGAGGCUGUGGCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY649271.1
ncRNA:25   UACUACUAUAGCUCCUCGAAUUUCC   1
  |||||||||||||||||||||||||
targets:143   AUGAUGAUAUCGAGGAGCUUAAAGG   167

0.0 Arabidopsis thaliana hypothetical protein (At2g15590) mRNA, complete cds NA coding protein psRNATarget
AY144113.1
ncRNA:25   UACUACUAUAGCUCCUCGAAUUUCC   1
  |||||||||||||||||||||||||
targets:150   AUGAUGAUAUCGAGGAGCUUAAAGG   174

0.0 Arabidopsis thaliana hypothetical protein (At2g15590/F9O13.14) mRNA, complete cds NA coding protein psRNATarget
NM_179627.2
ncRNA:25   UACUACUAUAGCUCCUCGAAUUUCC   1
  |||||||||||||||||||||||||
targets:173   AUGAUGAUAUCGAGGAGCUUAAAGG   197

0.0 Arabidopsis thaliana spire, putative (DUF1685) mRNA spire, putative (DUF1685)(AT2G15590) coding protein psRNATarget
AY144112.1
ncRNA:25   UACUACUAUAGCUCCUCGAAUUUCC   1
  |||||||||||||||||||||||||
targets:150   AUGAUGAUAUCGAGGAGCUUAAAGG   174

0.0 Arabidopsis thaliana hypothetical protein (At2g15590/F9O13.14) mRNA, complete cds; alternatively spliced NA coding protein psRNATarget
NM_127120.4
ncRNA:25   UACUACUAUAGCUCCUCGAAUUUCC   1
  |||||||||||||||||||||||||
targets:290   AUGAUGAUAUCGAGGAGCUUAAAGG   314

0.0 Arabidopsis thaliana spire, putative (DUF1685) mRNA spire, putative (DUF1685)(AT2G15590) coding protein psRNATarget
BT015169.1
ncRNA:25   UACUACUAUAGCUCCUCGAAUUUCC   1
  ||||||||*|=||||||||||||||
targets:299   AUGAUGAUCUUGAGGAGCUUAAAGG   323

2.0 Arabidopsis thaliana At2g31560 gene, complete cds NA coding protein psRNATarget
BX821587.1
ncRNA:25   UACUACUAUAGCUCCUCGAAUUUCC   1
  ||||||||*|=||||||||||||||
targets:309   AUGAUGAUCUUGAGGAGCUUAAAGG   333

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL56ZG02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AK316914.1
ncRNA:25   UACUACUAUAGCUCCUCGAAUUUCC   1
  ||||||||*|=||||||||||||||
targets:339   AUGAUGAUCUUGAGGAGCUUAAAGG   363

2.0 Arabidopsis thaliana AT2G31560 mRNA, complete cds, clone: RAFL15-09-C07 NA coding protein psRNATarget
NM_001336336.1
ncRNA:25   UACUACUAUAGCUCCUCGAAUUUCC   1
  ||||||||*|=||||||||||||||
targets:385   AUGAUGAUCUUGAGGAGCUUAAAGG   409

2.0 Arabidopsis thaliana signal transducer/transcription protein, putative (DUF1685) mRNA signal transducer/transcription protein, putative (DUF1685)(AT2G31560) coding protein psRNATarget
AY065205.1
ncRNA:25   UACUACUAUAGCUCCUCGAAUUUCC   1
  ||||||||*|=||||||||||||||
targets:353   AUGAUGAUCUUGAGGAGCUUAAAGG   377

2.0 Arabidopsis thaliana unknown protein (At2g31560) mRNA, complete cds NA coding protein psRNATarget
NM_179838.2
ncRNA:25   UACUACUAUAGCUCCUCGAAUUUCC   1
  ||||||||*|=||||||||||||||
targets:425   AUGAUGAUCUUGAGGAGCUUAAAGG   449

2.0 Arabidopsis thaliana signal transducer/transcription protein, putative (DUF1685) mRNA signal transducer/transcription protein, putative (DUF1685)(AT2G31560) coding protein psRNATarget
NM_201846.2
ncRNA:25   UACUACUAUAGCUCCUCGAAUUUCC   1
  ||||||||*|=||||||||||||||
targets:353   AUGAUGAUCUUGAGGAGCUUAAAGG   377

2.0 Arabidopsis thaliana signal transducer/transcription protein, putative (DUF1685) mRNA signal transducer/transcription protein, putative (DUF1685)(AT2G31560) coding protein psRNATarget
AK316967.1
ncRNA:25   UACUACUAUAGCUCCUCGAAUUUCC   1
  ||||||||*|=||||||||||||||
targets:343   AUGAUGAUCUUGAGGAGCUUAAAGG   367

2.0 Arabidopsis thaliana AT2G31560 mRNA, complete cds, clone: RAFL18-03-D24 NA coding protein psRNATarget
BT025750.1
ncRNA:25   UACUACUAUAGCUCCUCGAAUUUCC   1
  |*||||||*|||||||||||||=||
targets:260   ACGAUGAUCUCGAGGAGCUUAAGGG   284

2.5 Arabidopsis thaliana At2g43340 mRNA, complete cds NA coding protein psRNATarget
AF370604.1
ncRNA:25   UACUACUAUAGCUCCUCGAAUUUCC   1
  |*||||||*|||||||||||||=||
targets:260   ACGAUGAUCUCGAGGAGCUUAAGGG   284

2.5 Arabidopsis thaliana Unknown protein (At2g43340; T1O24.8) mRNA, complete cds NA coding protein psRNATarget
BX820372.1
ncRNA:25   UACUACUAUAGCUCCUCGAAUUUCC   1
  |*||||||*|||||||||||||=||
targets:314   ACGAUGAUCUCGAGGAGCUUAAGGG   338

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH27ZC03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX821473.1
ncRNA:25   UACUACUAUAGCUCCUCGAAUUUCC   1
  |*||||||*|||||||||||||=||
targets:315   ACGAUGAUCUCGAGGAGCUUAAGGG   339

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL44ZC11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AK227821.1
ncRNA:25   UACUACUAUAGCUCCUCGAAUUUCC   1
  |*||||||*|||||||||||||=||
targets:332   ACGAUGAUCUCGAGGAGCUUAAGGG   356

2.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-38-N08 NA coding protein psRNATarget
NM_180063.2
ncRNA:25   UACUACUAUAGCUCCUCGAAUUUCC   1
  |*||||||*|||||||||||||=||
targets:400   ACGAUGAUCUCGAGGAGCUUAAGGG   424

2.5 Arabidopsis thaliana hypothetical protein (DUF1685) mRNA hypothetical protein (DUF1685)(AT2G43340) coding protein psRNATarget
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