Search result

BaseInfo

ncRNA ID novel_gar_miR809
Species Gossypium arboreum
Class miRNA
Genome position Chr4:85884774-85884831 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588;SRR3180721;SRR1029587
Length 24
Mature sequence(if miRNA) 1 - UUUGGAGUGUGGAAAAAAAUGGCC - 24
Stem-loop(if miRNA) --     C   G         --   A  G
  CCAUU UUU UUACGCUCU  GUG UU A
  ||||| ||| |||||||||  ||| ||
  GGUAA AAA GGUGUGAGG  UAC AG A
CC     A   A         UU   A  C
Stem-loop sequence CCAUUCUUUGUUACGCUCUGUGAUUGAACGAACAUUUGGAGUGUGGAAAAAAAUGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017756106.1
ncRNA:24   CCGGUAAAA-AAAGGUGUGAGGUUU   1
  ****|||||-||||||||||||||=
targets:443   AAAAAUUUUCUUUCCACACUCCAAG   467

3.0 PREDICTED: Gossypium arboreum protein IQ-DOMAIN 14-like (LOC108457194), mRNA protein IQ-DOMAIN 14-like(LOC108457194) coding protein psRNATarget