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BaseInfo

ncRNA ID novel_gar_miR790
Species Gossypium arboreum
Class miRNA
Genome position Chr4:131564949-131565013 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588
Length 24
Mature sequence(if miRNA) 1 - CGGAUCAGCAGCAUUGAUCUGGAC - 24
Stem-loop(if miRNA) --      G     --  A  A   UU     AG
  CCGGAU AAUGC  CU AU CCG  CUUAG  U
  |||||| |||||  || || |||  |||||
  GGUCUA UUACG  GA UA GGC  GGGUU  U
CA      G     AC  C  -   UU     GA
Stem-loop sequence CCGGAUGAAUGCCUAAUACCGUUCUUAGAGUUAGUUGGGUUCGGAUCAGCAGCAUUGAUCUGGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017767145.1
ncRNA:24   CAGGUCUAGUUACGACGACUAGGC   1
  |||**||||*|||||||||=||||
targets:493   GUCGUGAUCUAUGCUGCUGGUCCG   516

2.5 PREDICTED: Gossypium arboreum non-classical arabinogalactan protein 30 (LOC108466778), mRNA non-classical arabinogalactan protein 30(LOC108466778) coding protein psRNATarget