ncRNA ID | novel_gar_miR790 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr4:131564949-131565013 [-] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR1029588 |
Length | 24 |
Mature sequence(if miRNA) | 1 - CGGAUCAGCAGCAUUGAUCUGGAC - 24 |
Stem-loop(if miRNA) |
--      G     --  A  A   UU     AG   CCGGAU AAUGC  CU AU CCG  CUUAG  U   |||||| |||||  || || |||  |||||   GGUCUA UUACG  GA UA GGC  GGGUU  U CA      G     AC  C  -   UU     GA |
Stem-loop sequence | CCGGAUGAAUGCCUAAUACCGUUCUUAGAGUUAGUUGGGUUCGGAUCAGCAGCAUUGAUCUGGAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_017767145.1 |
|
2.5 | PREDICTED: Gossypium arboreum non-classical arabinogalactan protein 30 (LOC108466778), mRNA | non-classical arabinogalactan protein 30(LOC108466778) | coding protein | psRNATarget |