ncRNA ID | novel_gar_miR780 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr4:119021353-119021527 [+] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR1029588;SRR1029586;SRR1029587 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AGAGGACUCUUAGACAGAGAGCGG - 24 |
Stem-loop(if miRNA) |
--               A AG    GA   UU   CUAAAUA   GUCAAACUCGAGUCAGUGUGGUAAUGGUUGUAGUUAUUAAUGAGU   AGAGGACUCUUAGAC G  AGCG  UGU  UGG       GAG                                             U   ||||||||||||||| |  ||||  |||  |||       |||   UCUCCUGAGAGUUUG U  UUGC  ACA  GCC       CUC                                             G GU               A GA    UG   CU   -----AC   AUUUUCACUACGAAGAAAAUCCCGUUGUUACCAACAACAAUAAUU |
Stem-loop sequence | AGAGGACUCUUAGACAGAGAGCGGAUGUUUUGGCUAAAUAGAGGUCAAACUCGAGUCAGUGUGGUAAUGGUUGUAGUUAUUAAUGAGUUGUUAAUAACAACAACCAUUGUUGCCCUAAAAGAAGCAUCACUUUUACUCCACCGUCACAGUCGUUAGUAGUUUGAGAGUCCUCUUG |