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BaseInfo

ncRNA ID novel_gar_miR779
Species Gossypium arboreum
Class miRNA
Genome position Chr4:117142646-117142721 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588;SRR1029587
Length 24
Mature sequence(if miRNA) 1 - UGUGUUCGAGUCUGUACUUGGGCA - 24
Stem-loop(if miRNA) --U      G     G A  UG      AUUUU      U
   GUGUUC AGUCU U CU  GGCAUU     UGCUGC A
   |||||| ||||| | ||  ||||||     ||||||
   CAUAAG UCAGG A GA  UUGUAG     GUGAUG A
AGU      G     G -  GU      ---GU      U
Stem-loop sequence UGUGUUCGAGUCUGUACUUGGGCAUUAUUUUUGCUGCUAAUGUAGUGUGGAUGUUUGAGAGGGACUGGAAUACUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017785742.1
ncRNA:24   ACGGGUUCAUGUCUGAGCUUGUGU   1
  ||||-||||||||*|||||||||*
targets:978   UGCC-AAGUACAGUCUCGAACACC   1000

2.5 PREDICTED: Gossypium arboreum 3-ketoacyl-CoA synthase 10-like (LOC108482616), mRNA 3-ketoacyl-CoA synthase 10-like(LOC108482616) coding protein psRNATarget