ncRNA ID |
ath_circ_029790 |
Species |
Arabidopsis thaliana |
Class |
circRNA |
Genome position |
5:25353340-25354416[-] |
Reference genome |
TAIR10 |
Source |
PlantcircBase
|
Method |
find_circ/NA |
Type |
exonic |
Splice junction sequence |
CTTGAAGATGTCTCCAAACATTCCTTGCAAAGGATTCTTACGCTGCACACCATAAAACCTCTCTGCAATCTCGTCCAGCAACTTCAAAATGTAACAAATTGAGGATTACAAGTTCAGGACACTCAGTGTAGAGATAATCACCCAGCATAGCATGCAACTCAGGATAGCCAGTACGTGGGCCTCCAAATTCTGCAGACCAT |
Tissues |
leaf/root, leaf, seed, whole_plant |
Exon boundary |
Yes-Yes |
Splicing signals |
AC-CT |
circRNA sequence |
NA |
Genomic sequence |
CTTGAAGATGTCTCCAAACATTCCTTGCAAAGGATTCTTACGCTGCACACCATAAAACCTCTCTGCAATCTCGTCCAGCAACTTCAAAATGTAACAAATTTTCCGGGTTGTCATCAGAAGTGAAAAAGAAACATATTGAATAAACAAGGAACAAAACATGCAGAGACCAAACAAAAAGGTTGCATATTGTTGAAGAAACTAGGGACCAGTAACTAGCAACTGTATACCTCGTTAAGCAGCTGATCTCTATCTATGCTTGACTTATATTTTACTCTTAACATATTGAAAAGAGGTAATGCATCCCTCTGCAACCTGTATTGGGCAAGAAATTTCTTAAGGTAAACAACAACGAGCAGAAAAGACTACAGGAAAAAGAATATCTAAGTAGGTAACTAACGTTTCCAGAAGATATGAGATAAATTGGATAAGGTCCGATTCTGAAAGCTCAGGATTTTTTGTCTCTGCTTGTTTCTTAATCTCATCCATCATAAAGTTTGCATCTTTCATGTTACCCATGGATAAATACCTATCATGCAAAAAAAGAAAAATCAACCTCTTTGGTTCCTTTCAAACTCTGCTATCTCTGTATCCAATTATAAAACATGAACTTACATGAGAACTGCTCGTGCAATTGCGAGGTCATCTTCTCCGGGATAACACTGTAAGGTTGTATTCAAGTAAGAAACCCCATATTTTTGGCCACGAGAGGTTAAATTGAAATCCAGACATTTCTTGAAATTCTATCCCAGTGGAAAAACTACTCTACACTAAAACTTAGGAATAATAGAAAATCAAAGATGAGACAACTTGAAACAAAGAGACTGACCCTTCCCATAAAGTTGACCAGCATAGATGCAAATTTCTCGGGGTCCTCAGCTCTAACAAAATGTCGGGATATCCGGACCATATCCTGCGAGAAATATATAAATAATGAAGAAAGATAAAACGTATAACTTTATAATCAAAAATGGCCACAAGAGGATTACAAGTTCAGGACACTCAGTGTAGAGATAATCACCCAGCATAGCATGCAACTCAGGATAGCCAGTACGTGGGCCTCCAAATTCTGCAGACCAT |