ncRNA ID |
ath_circ_029756 |
Species |
Arabidopsis thaliana |
Class |
circRNA |
Genome position |
5:25182042-25184894[+/+] |
Reference genome |
TAIR10 |
Source |
PlantcircBase
|
Method |
SMALT and Segemehl/find_circ/NA |
Type |
exonic |
Splice junction sequence |
GGTTCCAGGTTTGTCACTCGTTGGGAGGAGGAACTGGATCTGGTATGGGAACATTGTTGATCTCTAAGATCCGTGAAGAGTACCCAGATCGCATGATGCTAACAACTGGGCCAAGGGACACTACACTGAAGGAGCTGAACTAATCGATTCCGTTCTCGATGTTGTTCGTAAGGAAGCTGAGAACTGTGACTGCCTCCAAG |
Tissues |
siliques and seeds/leaf/root, leaf, aerial, inflorescences, seed |
Exon boundary |
Yes-Yes |
Splicing signals |
AG-GT |
circRNA sequence |
NA |
Genomic sequence |
GGTTCCAGGTTTGTCACTCGTTGGGAGGAGGAACTGGATCTGGTATGGGAACATTGTTGATCTCTAAGATCCGTGAAGAGTACCCAGATCGCATGATGCTTACCTTCTCGGTGTTCCCTTCACCAAAGGTTTCTGATACTGTGGTTGAGCCTTACAACGCTACTCTGTCTGTCCATCAGCTTGTTGAGAATGCTGATGAGTGCATGGTTCTTGATAATGAGGCCTTGTACGATATTTGCTTCAGGACTCTCAAACTCACTACCCCCAGCTGTAAGATTTCATTTCCCAATTATGCTCTCCACCAATGTTAAGATGAGTTAAACTATGCTTGAAATGCTTGGTCTACATGGTGTTTATGTTAATAATTGGTATCAAGTTCAGATCTGCAAGCATCTATGTAAAGCTTATAGTATTGTTACTGTTTCCATTGGTTTGCTCTTTGACTATGTCACTGTTTTATATCAGAATTCTGATTTGCAAGTCTCTGTGCAGAACTTATACTTTTGTTACTGTTTCCAGTCGTTTTGTACATATCTTTAGCCTCTTGTTTTGTGTGATATTGCTTCTGTTTACCTATTTTGATCTCATCACCGAAGTAGGTCCTTAAACTACTCTTATTGGAACAATACTTTCTGGTTAAGTTGCAAGTAGAAATCTGATACTTGATGATCATCAGTTTGTTGAGTTTACTGTCTGCTTTGATTCTTTTCTCATCGTACTGTTTGGATATGTCTAAAGCTTACACATACTTGGATTTTCTTCTGTGTGCAGTTGGTGATTTGAACCACTTGATTTCTGCTACTATGTCTGGTGTGACTTGCTGTCTGAGGTTCCCTGGTCAACTCAACTCTGACCTCCGAAAGCTTGCTGTGAATCTCATCCCATTCCCCCGTCTTCACTTCTTCATGGTGGGTTTTGCTCCTCTCACCTCAAGAGGTTCTCAGCAGTACCGTTCCCTCACAGTCCCTGAGCTCACCCAGCAAATGTGGGACTCCAAGAACATGATGTGTGCTGCAGACCCAAGGCACGGACGCTACCTCACAGCCTCTGCCATGTTCCGTGGCAAGATGAGCACAAAGGAAGTTGACGAGCAGATGCTGAATGTGCAGAACAAGAACTCGTCCTACTTTGTGGAGTGGATCCCCAACAACGTGAAATCGACAGTCTGTGACATCCCACCTACTGGTCTGAAGATGGCATCAACTTTCATTGGAAACTCAACATCAATCCAAGAGATGTTCAGGCGAGTGAGTGAGCAGTTCACAGCTATGTTCAGGAGAAAGGCTTTCTTGCATTGGTACACAGGTGAGGGAATGGACGAGATGGAATTCACAGAAGCGGAGAGCAACATGAACGATCTTGTGTCAGAGTACCAGCAATACCAAGATGCAACTGCGGATGAAGAAGGTGACTACGAGGATGAGGAAGAAGGTGAATATCAACAGGAGGAAGAGTACTGAGAATAATTTAGTTATAACTGCTTTAAAAACAAAAACAATTTAGTCGTTTGCTACTTTTCTTTTTTTTAAAAGGAACACCTCAACTACCAGTTGTAGTTTTTTTCTCTGCTTGTATTTGACATATCTGGTTGATGTTTCTGTACTTTTGTTCTTAATCTTGTTATTGCCTGTGATGTTTCTATTAATATTTTCCAGTTGTACTGTCTTCAATCTTTGGTCTTCTATCCTCATCTTTCTGCTACCTGACTACCTCAGTACCTACTTAAGGACTTTAGGTTTGATCTGTTTGGAAAATAGATTAAGGTTCGGGATTTGTGACCTCAGGGCAAGTGCAGCTCCATATTAGACCCCAAAACAAATTTATCACTGTTCTGAAATACAAATTCCCCAACATGCCTAGCTTTGAGGATTGATTGTTTCTAAGCTATTTATTTTCTTTACCAATTCACATAAATACTTTAGGATAAAGTGGAAATTGTCAATATTCAAACACGTTCTCTTCCCTTTGTTAACAAGCAAAATATGAAAATAACATGTGCTCTTCCATTATTTCATTTTTTGCAACCCTTATGAATGGGCCCAAAGCCTGCCACAAACATGTGCACAATATTAGAAAAGAAACTCTAAAAACAAAAACAAAATGAACATTCTTTTTTTTGCAATTTGTATTATAATATCAAAATAATATTTTAAAACTCAATTTAATATTGGAAAATAAAATAAAATTTGGAAACTAAACAGTTACCATAGAGAAAGAAACGGACCATTTTTAAATTTTGAATTTCGAGAAAAACAAAATCGGCGCCTCTTATTAGAGATAATTGGGGGAAAAAAACAAAAAACAAACACAGAGAGAGCAATAATAAAAACTCACTCACTCTCACTTTTTTCATTTCTTCAACAAAAAAAACCTAAAGCTCTCTTTTCTCTCCAGATTTCGATTCCCGAGGCTCGAGAGAAAACCGTAAATCTCTTCTCCGTTCACTCAATCAACCAAAGATGCGTGAGATTCTTCACATCCAGGGTGGTCAATGCGGTAACCAGATCGGAGCCAAGTTCTGGGAAGTGGTTTGCGCCGAGCACGGCATCGATCCAACCGGAAGGTACACCGGAGACTCAGATCTGCAACTTGAGCGCATCAACGTTTACTACAATGAAGCGAGTTGCGGTAGATTCGTTCCTCGTGCAGTGCTCATGGATTTGGAGCCTGGGACTATGGATAGTCTCAGATCTGGACCGTACGGTCAGACCTTTCGACCTGATAACTTCGTCTTTGGTCAATCCGGTGCGGGTAACAACTGGGCCAAGGGACACTACACTGAAGGAGCTGAACTAATCGATTCCGTTCTCGATGTTGTTCGTAAGGAAGCTGAGAACTGTGACTGCCTCCAAG |