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BaseInfo

ncRNA ID ath-miRf11017-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - UUUCUUCGCAAGUCCCUCGC - NA
Stem-loop(if miRNA)     CUU    UC     A           U  G
GGAA   GAUU  UUCGC AGUCCCUCGCG AU G
||||   ||||  ||||| ||||||||||| ||
CCUU   UUAA  GAGCG UUAGGGAGCGU UG C
    --U    -U     A           U  U
Stem-loop sequence GGAACUUGAUUUCUUCGCAAGUCCCUCGCGUAUGGCUGUUUGCGAGGGAUUAGCGAGUAAUUUUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_119947.3
ncRNA:20   CGCUCCCUGAACGCUUCUUU   1
  |=|||*||||||||||||||
targets:909   GUGAGAGACUUGCGAAGAAA   928

2.0 Arabidopsis thaliana SPT2 chromatin protein mRNA SPT2 chromatin protein(AT4G37860) coding protein psRNATarget
NM_001342459.1
ncRNA:20   CGCUCCCUGAACGCUUCUUU   1
  |=|||*||||||||||||||
targets:857   GUGAGAGACUUGCGAAGAAA   876

2.0 Arabidopsis thaliana SPT2 chromatin protein partial mRNA SPT2 chromatin protein(AT4G37860) coding protein psRNATarget