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BaseInfo

ncRNA ID	novel_gar_miR753
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr3:31220161-31220238 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588;SRR1029587
Length	22
Mature sequence(if miRNA)	1 - UUAGGGUUUUAGGGUUUAGGGA - 22
Stem-loop(if miRNA)	--UUA   UU     G      GA -           G U      GGG  UUAGG UUUAGG  C UGGGUUUUGUG U U      |||  ||||| ||||||  | ||||||||||| |      UUU  GGUUU GGGUUU  G AUUCGGGAUAU G A UGGGG   GG     G      -G U           G U
Stem-loop sequence	UUAGGGUUUUAGGGUUUAGGGACUGGGUUUUGUGGUUUAUGGUAUAGGGCUUAUGGUUUGGGGUUUGGGGUUUGGGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017775028.1	ncRNA:22   AGGGAUUUGGGAUUUUGGGAUU   1   **|||||||||||||*|||||| targets:43   AACCUAAACCCUAAAUCCCUAA   64 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum septin and tuftelin-interacting protein 1 homolog 1 (LOC108473462), mRNA	septin and tuftelin-interacting protein 1 homolog 1(LOC108473462)	coding protein	psRNATarget
XM_017778549.1	ncRNA:22   AGGGAUUUGGGAUUUUGGGAUU   1   *****||||||||||||||||| targets:41   AAAAGAAACCCUAAAACCCUAA   62 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At1g60770 (LOC108476354), mRNA	pentatricopeptide repeat-containing protein At1g60770(LOC108476354)	coding protein	psRNATarget
XM_017776719.1	ncRNA:22   AGGGAUUUGGGAUUUUGGGAUU   1   *=|||*||||||||||=||||| targets:143   AUCCUCAACCCUAAAAUCCUAA   164 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic-like (LOC108474718), transcript variant X1, mRNA	peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic-like(LOC108474718)	coding protein	psRNATarget
XM_017776720.1	ncRNA:22   AGGGAUUUGGGAUUUUGGGAUU   1   *=|||*||||||||||=||||| targets:143   AUCCUCAACCCUAAAAUCCUAA   164 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic-like (LOC108474718), transcript variant X2, mRNA	peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic-like(LOC108474718)	coding protein	psRNATarget
XM_017779829.1	ncRNA:22   AGGGAUUUGGGAUUUUGGGAUU   1   *=||*||||*|||||||||||| targets:296   AUCCAAAACGCUAAAACCCUAA   317 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum 4-hydroxybenzoate polyprenyltransferase, mitochondrial-like (LOC108477323), mRNA	4-hydroxybenzoate polyprenyltransferase, mitochondrial-like(LOC108477323)	coding protein	psRNATarget
XM_017752042.1	ncRNA:22   AGGGAUUUGGGAUUUUGGGAUU   1   ||=||*||=||||||||||||* targets:47   UCUCUCAAUCCUAAAACCCUAU   68 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum tRNA (guanine(26)-N(2))-dimethyltransferase (LOC108453755), transcript variant X1, mRNA	tRNA (guanine(26)-N(2))-dimethyltransferase(LOC108453755)	coding protein	psRNATarget
XM_017752043.1	ncRNA:22   AGGGAUUUGGGAUUUUGGGAUU   1   ||=||*||=||||||||||||* targets:47   UCUCUCAAUCCUAAAACCCUAU   68 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum tRNA (guanine(26)-N(2))-dimethyltransferase (LOC108453755), transcript variant X2, mRNA	tRNA (guanine(26)-N(2))-dimethyltransferase(LOC108453755)	coding protein	psRNATarget