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BaseInfo

ncRNA ID novel_gar_miR746
Species Gossypium arboreum
Class miRNA
Genome position Chr10:52519707-52519789 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588;SRR3180720
Length 21
Mature sequence(if miRNA) 63 - UGCCAAUGGAGAUUUGCCCCG - 83
Stem-loop(if miRNA) --       A     UC      CC   -     CCAC    C
  GGGCAAA UCUCC  UGGCAG  AGC CAUUG    UUCA C
  ||||||| |||||  ||||||  ||| |||||    ||||
  CCCGUUU AGAGG  ACCGUC  UCG GUGAU    AAGU U
GC       -     UA      UC   U     -CUU    A
Stem-loop sequence GGGCAAAAUCUCCUCUGGCAGCCAGCCAUUGCCACUUCACCUAUGAAUUCUAGUGUGCUCUCUGCCAAUGGAGAUUUGCCCCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017787615.1
ncRNA:21   GCCCCGUUUAGAGGUAACCGU   1
  =*||||||||||||*||||||
targets:900   UCGGGCAAAUCUCCUUUGGCA   920

1.5 PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108484013), mRNA probable ubiquitin-conjugating enzyme E2 24(LOC108484013) coding protein psRNATarget
XM_017794338.1
ncRNA:21   GCCCCGUUUAGAGGUAACCGU   1
  =*|||||*||||||*||||||
targets:934   UAGGGCACAUCUCCUUUGGCA   954

2.5 PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108489657), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC108489657) coding protein psRNATarget
XM_017794339.1
ncRNA:21   GCCCCGUUUAGAGGUAACCGU   1
  =*|||||*||||||*||||||
targets:1012   UAGGGCACAUCUCCUUUGGCA   1032

2.5 PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108489657), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC108489657) coding protein psRNATarget
XM_017787615.1
ncRNA:21   GCCCCGUUUAGAGGUAACCGU   1
  =**|||||||||||*||||||
targets:860   UUCGGCAAAUCUCCUUUGGCA   880

2.5 PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108484013), mRNA probable ubiquitin-conjugating enzyme E2 24(LOC108484013) coding protein psRNATarget
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