Search result

BaseInfo

ncRNA ID	ath-miRf11015-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	25
Mature sequence(if miRNA)	NA - AAGACACUCGACCUCGGGGUCGAGU - NA
Stem-loop(if miRNA)	G GA     A                C     AUGU  U AAG   U   G  CU ----         U GAU G  UCAAG CACUCGACCUCGGGGU GAGUG    GG G   UAG GAU UC  C    UACUCGACC G ||| |  ||||| |||||||||||||||| |||||    || |   ||| ||| ||  |    ||||||||| CUA U  AGUUU GUGAGCUGGGGCUCCA CUCAU    CC C   GUU CUA AG  G    GUGAGCUGG G    G AC     G                U     ----  U GAA   -   G  UU UCUA         U
Stem-loop sequence	GAUGGGAUCAAGACACUCGACCUCGGGGUCGAGUGAUGUGGUGAAGUAGUGAUGUCCUCUACUCGACCUGGUGGUCGAGUGAUCUGUUGAGAUCUUGAAGCUCCUACUCUACCUCGGGGUCGAGUGGUUUGACAUGAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF183042.1	ncRNA:25   UGAGCUGGGGCUCCAGCUCACAGAA   1   ||||||||||||||||||||||||| targets:1619   ACUCGACCCCGAGGUCGAGUGUCUU   1643 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:25   UGAGCUGGGGCUCCAGCUCACAGAA   1   |||||||||||*||||||||||||| targets:1211   ACUCGACCCCGUGGUCGAGUGUCUU   1235 Target Full Sequence	1.0	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
EF183194.1	ncRNA:25   UGAGCUGGGGCUCCAGCUCACAGAA   1   ||||||||*=||||||||||||||| targets:518   ACUCGACCAUGAGGUCGAGUGUCUU   542 Target Full Sequence	2.0	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:25   UGAGCUGGGGCUCCAGCUCACAGAA   1   ||||||||=|||||*|||||||||| targets:1677   ACUCGACCUCGAGGCCGAGUGUCUU   1701 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:25   UGAGCUGGGGCUCCAGCUCACAGAA   1   ||||||||*||||||||||||||*| targets:1152   ACUCGACCACGAGGUCGAGUGUCCU   1176 Target Full Sequence	2.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT014714.1	ncRNA:25   UGAGCUGGGGCUCCAGCUCACAGAA   1   ||||||||||*||||||||||*||| targets:138   ACUCGACCCCCAGGUCGAGUGACUU   162 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:25   UGAGCUGGGGCUCCAGCUCACAGAA   1   ||||||||||*||||||||||*||| targets:138   ACUCGACCCCCAGGUCGAGUGACUU   162 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget