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BaseInfo

ncRNA ID	novel_gar_miR741
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr10:52516139-52516246 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588;SRR1029586;SRR1029587
Length	21
Mature sequence(if miRNA)	88 - UGCCAAAGGAGAUUUGCCCGG - 108
Stem-loop(if miRNA)	--      U      A        C   -    -UACACAG     ---CC   UCC   GGGCAA AUCUCC UUGGCAGG GGC CACU        GCAUU     UUG   A   |||||| |||||| |||||||| ||| ||||        |||||     |||   CCCGUU UAGAGG AACCGUCU UCG GUGA        CGUAA     AAC   A GG      -      A        C   U    CAUAAUUA     ACUCA   UUC
Stem-loop sequence	GGGCAAUAUCUCCAUUGGCAGGCGGCCACUUACACAGGCAUUCCUUGUCCAACUUCAAACUCAAAUGCAUUAAUACAGUGUGCUCUCUGCCAAAGGAGAUUUGCCCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017787615.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   =|||||||||||||||||||| targets:900   UCGGGCAAAUCUCCUUUGGCA   920 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108484013), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC108484013)	coding protein	psRNATarget
XM_017794338.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   ==||||||||||||||||||| targets:879   UUGGGCAAAUCUCCUUUGGCA   899 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108489657), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC108489657)	coding protein	psRNATarget
XM_017794339.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   ==||||||||||||||||||| targets:957   UUGGGCAAAUCUCCUUUGGCA   977 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108489657), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC108489657)	coding protein	psRNATarget
XM_017787615.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   ==*|||||||||||||||||| targets:860   UUCGGCAAAUCUCCUUUGGCA   880 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108484013), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC108484013)	coding protein	psRNATarget
XM_017794338.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   =*|||||*||||||||||||| targets:934   UAGGGCACAUCUCCUUUGGCA   954 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108489657), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC108489657)	coding protein	psRNATarget
XM_017794339.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   =*|||||*||||||||||||| targets:1012   UAGGGCACAUCUCCUUUGGCA   1032 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108489657), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC108489657)	coding protein	psRNATarget
XM_017794338.1	ncRNA:21   GGCC-CGUUUAGAGGAAACCGU   1   ==||-|||*||||||||||||| targets:676   UUGGAGCAUAUCUCCUUUGGCA   697 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108489657), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC108489657)	coding protein	psRNATarget
XM_017794339.1	ncRNA:21   GGCC-CGUUUAGAGGAAACCGU   1   ==||-|||*||||||||||||| targets:676   UUGGAGCAUAUCUCCUUUGGCA   697 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum probable ubiquitin-conjugating enzyme E2 24 (LOC108489657), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC108489657)	coding protein	psRNATarget