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BaseInfo

ncRNA ID	novel_gar_miR732
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr3:27247424-27247586 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588;SRR1029586
Length	24
Mature sequence(if miRNA)	1 - AUUGGAAAGGGAUAGGGAUGACGU - 24
Stem-loop(if miRNA)	--                             C       C A      CC  CCA      A  AU        GAA      U   GUUAUUCUUAUUCUUUUUCAAUAGGAGAA GACAAAU A AUUUUU  UC   AUUUUU GC  UUUUAGUU   UUUGAA U   ||||||||||||||||||||||||||||| ||||||| | ||||||  ||   |||||| ||  ||||||||   ||||||   CAGUAGGGAUAGGGAAAGGUUAUCCUCUU CUGUUUA U UAAAAA  AG   UAAAAG CG  AAAAUUAA   GGACUU U UG                             A       U C      AU  AAC      G  --        ---      U
Stem-loop sequence	GUUAUUCUUAUUCUUUUUCAAUAGGAGAACGACAAAUCAAAUUUUUCCUCCCAAUUUUUAGCAUUUUUAGUUGAAUUUGAAUUUUUUCAGGAAUUAAAAGCGGAAAAUCAAGAUAAAAAAUCUUAUUUGUCAUUCUCCUAUUGGAAAGGGAUAGGGAUGACGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017755269.1	ncRNA:24   UGCAGUAGGGAUAGGGAAAGGUUA   1   =**|*||||||||||*|||||||| targets:3002   GAAUAAUCCCUAUCCAUUUCCAAU   3025 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum protein TIME FOR COFFEE-like (LOC108456687), transcript variant X1, mRNA	protein TIME FOR COFFEE-like(LOC108456687)	coding protein	psRNATarget
XM_017755273.1	ncRNA:24   UGCAGUAGGGAUAGGGAAAGGUUA   1   =**|*||||||||||*|||||||| targets:2999   GAAUAAUCCCUAUCCAUUUCCAAU   3022 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum protein TIME FOR COFFEE-like (LOC108456687), transcript variant X4, mRNA	protein TIME FOR COFFEE-like(LOC108456687)	coding protein	psRNATarget
XM_017755271.1	ncRNA:24   UGCAGUAGGGAUAGGGAAAGGUUA   1   =**|*||||||||||*|||||||| targets:2999   GAAUAAUCCCUAUCCAUUUCCAAU   3022 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum protein TIME FOR COFFEE-like (LOC108456687), transcript variant X3, mRNA	protein TIME FOR COFFEE-like(LOC108456687)	coding protein	psRNATarget
XM_017755274.1	ncRNA:24   UGCAGUAGGGAUAGGGAAAGGUUA   1   =**|*||||||||||*|||||||| targets:2996   GAAUAAUCCCUAUCCAUUUCCAAU   3019 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum protein TIME FOR COFFEE-like (LOC108456687), transcript variant X5, mRNA	protein TIME FOR COFFEE-like(LOC108456687)	coding protein	psRNATarget
XM_017755275.1	ncRNA:24   UGCAGUAGGGAUAGGGAAAGGUUA   1   =**|*||||||||||*|||||||| targets:2993   GAAUAAUCCCUAUCCAUUUCCAAU   3016 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum protein TIME FOR COFFEE-like (LOC108456687), transcript variant X6, mRNA	protein TIME FOR COFFEE-like(LOC108456687)	coding protein	psRNATarget
XM_017755276.1	ncRNA:24   UGCAGUAGGGAUAGGGAAAGGUUA   1   =**|*||||||||||*|||||||| targets:2993   GAAUAAUCCCUAUCCAUUUCCAAU   3016 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum protein TIME FOR COFFEE-like (LOC108456687), transcript variant X7, mRNA	protein TIME FOR COFFEE-like(LOC108456687)	coding protein	psRNATarget
XM_017755280.1	ncRNA:24   UGCAGUAGGGAUAGGGAAAGGUUA   1   =**|*||||||||||*|||||||| targets:2990   GAAUAAUCCCUAUCCAUUUCCAAU   3013 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum protein TIME FOR COFFEE-like (LOC108456687), transcript variant X11, mRNA	protein TIME FOR COFFEE-like(LOC108456687)	coding protein	psRNATarget
XM_017755277.1	ncRNA:24   UGCAGUAGGGAUAGGGAAAGGUUA   1   =**|*||||||||||*|||||||| targets:2912   GAAUAAUCCCUAUCCAUUUCCAAU   2935 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum protein TIME FOR COFFEE-like (LOC108456687), transcript variant X8, mRNA	protein TIME FOR COFFEE-like(LOC108456687)	coding protein	psRNATarget
XM_017755278.1	ncRNA:24   UGCAGUAGGGAUAGGGAAAGGUUA   1   =**|*||||||||||*|||||||| targets:2909   GAAUAAUCCCUAUCCAUUUCCAAU   2932 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum protein TIME FOR COFFEE-like (LOC108456687), transcript variant X9, mRNA	protein TIME FOR COFFEE-like(LOC108456687)	coding protein	psRNATarget
XM_017755279.1	ncRNA:24   UGCAGUAGGGAUAGGGAAAGGUUA   1   =**|*||||||||||*|||||||| targets:2906   GAAUAAUCCCUAUCCAUUUCCAAU   2929 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum protein TIME FOR COFFEE-like (LOC108456687), transcript variant X10, mRNA	protein TIME FOR COFFEE-like(LOC108456687)	coding protein	psRNATarget
XM_017755270.1	ncRNA:24   UGCAGUAGGGAUAGGGAAAGGUUA   1   =**|*||||||||||*|||||||| targets:2897   GAAUAAUCCCUAUCCAUUUCCAAU   2920 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum protein TIME FOR COFFEE-like (LOC108456687), transcript variant X2, mRNA	protein TIME FOR COFFEE-like(LOC108456687)	coding protein	psRNATarget
XM_017759563.1	ncRNA:24   UGCAGUAGGGAUAGGGAAAGGUUA   1   ||||||||=*|||||||||||||| targets:2369   ACGUCAUCUGUAUCCCUUUCCAAU   2392 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum L-type lectin-domain containing receptor kinase IX.1-like (LOC108460187), mRNA	L-type lectin-domain containing receptor kinase IX.1-like(LOC108460187)	coding protein	psRNATarget
XM_017758885.1	ncRNA:24   UGCAGUAGGGAUAGGGAAAGGUUA   1   ||||||||=*|||||||||||||| targets:1637   ACGUCAUCUGUAUCCCUUUCCAAU   1660 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum enolase-like (LOC108459500), mRNA	enolase-like(LOC108459500)	coding protein	psRNATarget