Search result

BaseInfo

ncRNA ID novel_gar_miR727
Species Gossypium arboreum
Class miRNA
Genome position Chr3:45023559-45023742 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588;SRR1029586;SRR1029587
Length 24
Mature sequence(if miRNA) 1 - ACAGAAGAACUAGUUUACUCUUUG - 24
Stem-loop(if miRNA) --     C        CC            AA  A   U      C A           CAUG    -   CCAU    AAAUAAUG        U
  AAGAG AAACUAGU  UUUCUGUUAAAA  UU UUU UUUCUA U UUAAAAACUGG    AUUG ACA    AACA        ACACGUGA G
  ||||| ||||||||  ||||||||||||  || ||| |||||| | |||||||||||    |||| |||    ||||        ||||||||
  UUCUC UUUGAUCA  GAAGACAAUUUU  AA AAG AAAGAU A AAUUUUUGAUC    UGAC UGU    UUGU        UGUGUACU U
GU     A        -A            AA  A   U      U C           --AA    A   --AU    --ACUCCA        G
Stem-loop sequence AAGAGCAAACUAGUCCUUUCUGUUAAAAAAUUAUUUUUUUCUACUAUUAAAAACUGGCAUGAUUGACACCAUAACAAAAUAAUGACACGUGAUGUGUCAUGUGUACCUCAUGUUUAUGUACAGUAACUAGUUUUUAACAUUAGAAAUGAAAAAAAUUUUAACAGAAGAACUAGUUUACUCUUUG