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BaseInfo

ncRNA ID	novel_gar_miR720
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr3:64019887-64019962 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588;SRR1029586;SRR3180715;SRR3180719;SRR3180720;SRR3180721;SRR1029587
Length	21
Mature sequence(if miRNA)	1 - UUCGGACCAGGCUUCAUUCCC - 21
Stem-loop(if miRNA)	--     UU                    UAU  A  UU   GAAUG  GUCUGGUUCGAAGUCAUUCA   GA AC  A   |||||  ||||||||||||||||||||   || ||   CUUAC  CGGACCAGGCUUUAGUAAGU   UU UG  A CC     UU                    --U  C  UU
Stem-loop sequence	GAAUGUUGUCUGGUUCGAAGUCAUUCAUAUGAAACUUAAUUGUCUUUUGAAUGAUUUCGGACCAGGCUUCAUUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017751100.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||||||||||||||||||=| targets:1773   UGGAAUGAAGCCUGGUCCGGA   1793 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-15 (LOC108453155), mRNA	homeobox-leucine zipper protein ATHB-15(LOC108453155)	coding protein	psRNATarget
XM_017768339.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:774   UGGGAUGAAGCCUGGUCCGGA   794 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein REVOLUTA (LOC108467628), mRNA	homeobox-leucine zipper protein REVOLUTA(LOC108467628)	coding protein	psRNATarget
XM_017788432.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:876   UGGGAUGAAGCCUGGUCCGGA   896 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-8-like (LOC108484566), mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC108484566)	coding protein	psRNATarget
XM_017794484.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:1081   UGGGAUGAAGCCUGGUCCGGA   1101 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-14-like (LOC108489754), mRNA	homeobox-leucine zipper protein ATHB-14-like(LOC108489754)	coding protein	psRNATarget
XM_017787622.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:1016   UGGGAUGAAGCCUGGUCCGGA   1036 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-8-like (LOC108484018), transcript variant X2, mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC108484018)	coding protein	psRNATarget
XM_017787255.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:1257   UGGGAUGAAGCCUGGUCCGGA   1277 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein REVOLUTA-like (LOC108483704), transcript variant X3, mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC108483704)	coding protein	psRNATarget
XM_017787621.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:1015   UGGGAUGAAGCCUGGUCCGGA   1035 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-8-like (LOC108484018), transcript variant X1, mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC108484018)	coding protein	psRNATarget
XM_017787254.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:1258   UGGGAUGAAGCCUGGUCCGGA   1278 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein REVOLUTA-like (LOC108483704), transcript variant X2, mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC108483704)	coding protein	psRNATarget
XM_017787253.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:1258   UGGGAUGAAGCCUGGUCCGGA   1278 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein REVOLUTA-like (LOC108483704), transcript variant X1, mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC108483704)	coding protein	psRNATarget
XM_017759163.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:963   UGGGAUGAAGCCUGGUCCGGA   983 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-8-like (LOC108459756), mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC108459756)	coding protein	psRNATarget
XM_017747512.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:1435   UGGGAUGAAGCCUGGUCCGGA   1455 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein REVOLUTA-like (LOC108450068), mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC108450068)	coding protein	psRNATarget