Search result

BaseInfo

ncRNA ID novel_gar_miR711
Species Gossypium arboreum
Class miRNA
Genome position Chr2:67310913-67311031 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586
Length 23
Mature sequence(if miRNA) 1 - CACUCUUGGCUCAAUGAACCAUG - 23
Stem-loop(if miRNA) --        G       A  A    C        ---------    ACAUAUGACCACCCAC
  UGGUUCAU GAGCCGA AG GUCU GACCAUAU         GUGG                C
  |||||||| ||||||| || |||| ||||||||         ||||
  ACCAAGUA CUCGGUU UC CGGA CUGGUAUG         UCUG                A
GU        A       C  A    A        UAGAUACCC    UGAGAUACAACGGACA
Stem-loop sequence UGGUUCAUGGAGCCGAAAGAGUCUCGACCAUAUGUGGACAUAUGACCACCCACCAACAGGCAACAUAGAGUGUCUCCCAUAGAUGUAUGGUCAAGGCACUCUUGGCUCAAUGAACCAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017774112.1
ncRNA:23   GUACCAAGUAACUCGGUUCUCAC   1
  ||-|*||||*||||||||||||*
targets:501   CA-GCUUCACUGAGCCAAGAGUU   522

3.0 PREDICTED: Gossypium arboreum uncharacterized LOC108472566 (LOC108472566), mRNA uncharacterized LOC108472566(LOC108472566) coding protein psRNATarget